RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 PQBP1O60828 265 aaKnown RBP11.87□□□□□ -0.51
SS18-210ENST00000578700 FLOT1O75955 427 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 PGK1P00558 417 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 FGAP02671 866 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 RAG1P15918 1043 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 PTMSP20962 102 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 ITGB8P26012 769 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 DSG3P32926 999 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 ALX1Q15699 326 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 KIAA1755Q5JYT7 1200 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 CERS3Q8IU89 383 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 NCOA7Q8NI08 942 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 SYMPKQ92797 1274 aaKnown RBP11.87□□□□□ -0.51
SS18-210ENST00000578700 ARMT1Q9H993 441 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 XPNPEP3Q9NQH7 507 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 TACC3Q9Y6A5 838 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 SLC4A4Q9Y6R1 1079 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 CHD9Q3L8U1 2897 aa11.87□□□□□ -0.51
SS18-210ENST00000578700 MYH8P13535 1937 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 BDP1A6H8Y1 2624 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 GOLGA6L22H0YM25 854 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 RAD21O60216 631 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 CLTBP09497 229 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 CYP2D6P10635 497 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 RARBP10826 455 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 FCER1AP12319 257 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 PDIA4P13667 645 aaKnown RBP11.86□□□□□ -0.51
SS18-210ENST00000578700 CPA1P15085 419 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 EPHB4P54760 987 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 GRIN2CQ14957 1233 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 NFKBIBQ15653 356 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 SHCBP1Q8NEM2 672 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 ATG4CQ96DT6 458 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 MAML3Q96JK9 1138 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 MMP19Q99542 508 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 CRNKL1Q9BZJ0 848 aaKnown RBP11.86□□□□□ -0.51
SS18-210ENST00000578700 RNF41Q9H4P4 317 aaPredicted RBP11.86□□□□□ -0.51
SS18-210ENST00000578700 TMEM39AQ9NV64 488 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 SMC3Q9UQE7 1217 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 MYO9BQ13459 2157 aa11.86□□□□□ -0.51
SS18-210ENST00000578700 IGHA2P01877 340 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 PGK2P07205 417 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 TAL1P17542 331 aaPredicted RBP11.85□□□□□ -0.51
SS18-210ENST00000578700 MCM5P33992 734 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 DDIT3P35638 169 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 SNX17Q15036 470 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 Q6ZUG5 572 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 RNF180Q86T96 592 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 CLEC10AQ8IUN9 316 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 IFNL3Q8IZI9 196 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 MB21D1Q8N884 522 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 SLC44A5Q8NCS7 719 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 SDR42E1Q8WUS8 393 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 DYNLL2Q96FJ2 89 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 MROH8Q9H579 483 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 CNNM2Q9H8M5 875 aa11.85□□□□□ -0.51
SS18-210ENST00000578700 PARP14Q460N5 1801 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 A0A0G2JMZ2 1700 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.84□□□□□ -0.51
SS18-210ENST00000578700 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.84□□□□□ -0.51
SS18-210ENST00000578700 SLC3A2P08195 630 aaKnown RBP11.84□□□□□ -0.51
SS18-210ENST00000578700 HAND2P61296 217 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 FPGSQ05932 587 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 GABPAQ06546 454 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 AMOTL1Q8IY63 956 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 LCORLQ8N3X6 602 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 USP38Q8NB14 1042 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 LENG1Q96BZ8 264 aaPredicted RBP11.84□□□□□ -0.51
SS18-210ENST00000578700 RIOK1Q9BRS2 568 aaKnown RBP11.84□□□□□ -0.51
SS18-210ENST00000578700 KRT23Q9C075 422 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 ARHGEF10LQ9HCE6 1279 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 PHF24Q9UPV7 400 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 KIF3AQ9Y496 699 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 PLXNA1Q9UIW2 1896 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 WDR19Q8NEZ3 1342 aa11.84□□□□□ -0.51
SS18-210ENST00000578700 REV3LO60673 3130 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 NAV1Q8NEY1 1877 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 A0A1W2PQ45 241 aaPredicted RBP11.83□□□□□ -0.52
SS18-210ENST00000578700 A0A1W2PQY0 241 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 DDX11L8A8MPP1 907 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 SLC25A27O95847 323 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 AKR1B1P15121 316 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 PDCP20941 246 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 DNAJB2P25686 324 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 TMEM132BQ14DG7 1078 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 C1orf53Q5VUE5 145 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 GIMAP6Q6P9H5 292 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 MFSD6Q6ZSS7 791 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 TMEM179Q6ZVK1 233 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 CCDC83Q8IWF9 413 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 ABRAQ8N0Z2 381 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 VTI1AQ96AJ9 217 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 ZNF576Q9H609 170 aa11.83□□□□□ -0.52
SS18-210ENST00000578700 COL11A1P12107 1806 aaPredicted RBP11.83□□□□□ -0.52
SS18-210ENST00000578700 GSG1L2A8MUP6 293 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 DCDC2CA8MYV0 355 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 KIAA0355O15063 1070 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 PRC1O43663 620 aa11.82□□□□□ -0.52
SS18-210ENST00000578700 DHX16O60231 1041 aaKnown RBP11.82□□□□□ -0.52
SS18-210ENST00000578700 COL9A1P20849 921 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms