RNA–Protein interactions for RNA: ENST00000578112.5

SMARCE1-214, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 5

Gene SMARCE1, Length 2,384 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-214ENST00000578112 BMP3P12645 472 aa13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 TAL1P17542 331 aaPredicted RBP13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 TDO2P48775 406 aa13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 KCNA10Q16322 511 aa13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 STAG1Q8WVM7 1258 aa13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 ZHX1Q9UKY1 873 aaPredicted RBP13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 GPAA1O43292 621 aa13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 PQBP1O60828 265 aaKnown RBP13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 ANKRD35Q8N283 1001 aa13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 FAM133AQ8N9E0 248 aa13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 CLIP2Q9UDT6 1046 aa13.37□□□□□ -0.27
SMARCE1-214ENST00000578112 CENPFP49454 3210 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 ARMCX2Q7L311 632 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 MORC4Q8TE76 937 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 OSBP2Q969R2 916 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 KATNBL1Q9H079 304 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 BRCA2P51587 3418 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 MYCNP04198 464 aaPredicted RBP13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 STAT2P52630 851 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 SLFN13Q68D06 897 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 FAM126BQ8IXS8 530 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 IFNL3Q8IZI9 196 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 HERVK_113Q902F9 699 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 FGD4Q96M96 766 aa13.36□□□□□ -0.27
SMARCE1-214ENST00000578112 SMCHD1A6NHR9 2005 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 CD4P01730 458 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 ITGB8P26012 769 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 NOVP48745 357 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 IQSEC1Q6DN90 963 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 MYLIPQ8WY64 445 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 CEP95Q96GE4 821 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 EPB41L4AQ9HCS5 686 aaPredicted RBP13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 VTA1Q9NP79 307 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 RIPK3Q9Y572 518 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 MINDY4BA8MYZ0 360 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 ASGR1P07306 291 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 PFKMP08237 780 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 TSPY3P0CV98 308 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 TSPY8P0CW00 308 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 DNAJB2P25686 324 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 CCDC144BQ3MJ40 725 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 TIFAQ96CG3 184 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 IL23AQ9NPF7 189 aa13.35□□□□□ -0.27
SMARCE1-214ENST00000578112 EPHB4P54760 987 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 TMEM240Q5SV17 173 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 MIER1Q8N108 512 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 KIFC2Q96AC6 838 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 RAVER2Q9HCJ3 691 aaKnown RBP13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 ANAPC4Q9UJX5 808 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 C6orf222P0C671 652 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 SLFNL1Q499Z3 407 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 TJAP1Q5JTD0 557 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 ZMYM1Q5SVZ6 1142 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 SAMD1Q6SPF0 538 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 DCAF4Q8WV16 495 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 GAS2L1Q99501 681 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 NUP88Q99567 741 aaPredicted RBP13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 ZNF576Q9H609 170 aa13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 GNEQ9Y223 722 aaKnown RBP13.34□□□□□ -0.27
SMARCE1-214ENST00000578112 RAD21O60216 631 aa13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 TNFAIP2Q03169 654 aa13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 ATXN2LQ8WWM7 1075 aaKnown RBP13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 MPHOSPH6Q99547 160 aaKnown RBP13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 AP5M1Q9H0R1 490 aa13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 NAPBQ9H115 298 aa13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 MSRAQ9UJ68 235 aa13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 ZMYM6O95789 1325 aa13.33□□□□□ -0.28
SMARCE1-214ENST00000578112 SMIM22K7EJ46 135 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 CTAGE5O15320 804 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 PCP11498 1178 aaKnown RBP13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 PPARAQ07869 468 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 ALX1Q15699 326 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 HOMEZQ8IX15 550 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 RPUSD2Q8IZ73 545 aaKnown RBP13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 CPXCR1Q8N123 301 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 FAM161BQ96MY7 647 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.32□□□□□ -0.283e-7■■■□□ 15.4
SMARCE1-214ENST00000578112 RNF146Q9NTX7 359 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 POLR3EQ9NVU0 708 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 M0R2C6 588 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 NKRFO15226 690 aaKnown RBP eCLIP13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 ORC4O43929 436 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 KPNA6O60684 536 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 FGRP09769 529 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 RFC2P35250 354 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 PTPN11Q06124 597 aaPredicted RBP13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 GNASQ5JWF2 1037 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 DIEXFQ68CQ4 756 aaKnown RBP13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 BTNL9Q6UXG8 535 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 CCDC144CPQ8IYA2 1237 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 PRDM6Q9NQX0 595 aa13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 ADD3Q9UEY8 706 aaKnown RBP13.32□□□□□ -0.28
SMARCE1-214ENST00000578112 APPP05067 770 aa13.31□□□□□ -0.28
SMARCE1-214ENST00000578112 SLC1A4P43007 532 aa13.31□□□□□ -0.28
SMARCE1-214ENST00000578112 A1CFQ9NQ94 594 aaKnown RBP13.31□□□□□ -0.28
SMARCE1-214ENST00000578112 TCP11L1Q9NUJ3 509 aa13.31□□□□□ -0.28
SMARCE1-214ENST00000578112 ZNF536O15090 1300 aa13.31□□□□□ -0.28
SMARCE1-214ENST00000578112 RBM47A0AV96 593 aaKnown RBP13.31□□□□□ -0.28
SMARCE1-214ENST00000578112 MYADML2A6NDP7 307 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms