RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 RBP3P10745 1247 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 LMNB1P20700 586 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 GARTP22102 1010 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 GIPRP48546 466 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 PRELPP51888 382 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 CASP7P55210 303 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 TIFAQ96CG3 184 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 RHOVQ96L33 236 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 TTC14Q96N46 770 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 TRIM56Q9BRZ2 755 aaKnown RBP8.15□□□□□ -1.11
VPS53-217ENST00000575100 RHOBTB2Q9BYZ6 727 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 AASDHPPTQ9NRN7 309 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 MAP3K2Q9Y2U5 619 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 SLC45A1Q9Y2W3 748 aa8.15□□□□□ -1.11
VPS53-217ENST00000575100 CACNA1SQ13698 1873 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 GLTPD2A6NH11 291 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 BACH1O14867 736 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 RFPL3O75679 317 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 ABLIM3O94929 683 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 STARD3NLO95772 234 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 HTRA3P83110 453 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 SSRP1Q08945 709 aaKnown RBP8.14□□□□□ -1.11
VPS53-217ENST00000575100 PABPC4Q13310 644 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS53-217ENST00000575100 PROX2Q3B8N5 592 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 INTS3Q68E01 1043 aaKnown RBP8.14□□□□□ -1.11
VPS53-217ENST00000575100 PRPF40BQ6NWY9 871 aaKnown RBP8.14□□□□□ -1.11
VPS53-217ENST00000575100 NXPE4Q6UWF7 544 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 ALDH8A1Q9H2A2 487 aaPredicted RBP8.14□□□□□ -1.11
VPS53-217ENST00000575100 CARMIL3Q8ND23 1372 aa8.14□□□□□ -1.11
VPS53-217ENST00000575100 SERPINB2P05120 415 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 TYRP1P17643 537 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 FOXK2Q01167 660 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 FXNQ16595 210 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 CWF19L2Q2TBE0 894 aaKnown RBP8.13□□□□□ -1.11
VPS53-217ENST00000575100 BEND3Q5T5X7 828 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 TOGARAM2Q6ZUX3 1019 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 SH3RF1Q7Z6J0 888 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 STRA8Q7Z7C7 330 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 TTLL6Q8N841 843 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 MEIS3Q99687 375 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 TEX13AQ9BXU3 409 aaPredicted RBP8.13□□□□□ -1.11
VPS53-217ENST00000575100 RETREG1Q9H6L5 497 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 EVLQ9UI08 416 aaPredicted RBP8.13□□□□□ -1.11
VPS53-217ENST00000575100 HDAC9Q9UKV0 1011 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 ERBB4Q15303 1308 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 ANO9A1A5B4 782 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 NFKBIEO00221 500 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 GJB6O95452 261 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 IGKV5-2P06315 115 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 CCNYL3P0C7X3 344 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 VEGFAP15692 232 aaPredicted RBP8.13□□□□□ -1.11
VPS53-217ENST00000575100 PTPREP23469 700 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 CRKP46108 304 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 EIF5P55010 431 aaKnown RBP8.13□□□□□ -1.11
VPS53-217ENST00000575100 BRICD5Q6PL45 260 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 ST13P5Q8NFI4 369 aaPredicted RBP8.13□□□□□ -1.11
VPS53-217ENST00000575100 DNAAF4Q8WXU2 420 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 ZNF669Q96BR6 464 aaPredicted RBP8.13□□□□□ -1.11
VPS53-217ENST00000575100 ZBTB40Q9NUA8 1239 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 PGAP2Q9UHJ9 254 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 CACNA1FO60840 1977 aa8.13□□□□□ -1.11
VPS53-217ENST00000575100 A0A087WZG4 1122 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 A6NHS1 94 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 PGRP06401 933 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 CBX2Q14781 532 aaPredicted RBP8.12□□□□□ -1.11
VPS53-217ENST00000575100 TOMM20Q15388 145 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 CDC37Q16543 378 aaPredicted RBP8.12□□□□□ -1.11
VPS53-217ENST00000575100 COL13A1Q5TAT6 717 aaPredicted RBP8.12□□□□□ -1.11
VPS53-217ENST00000575100 C2CD5Q86YS7 1000 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 SLITRK4Q8IW52 837 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 MTMR8Q96EF0 704 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 ELAC2Q9BQ52 826 aaKnown RBP8.12□□□□□ -1.11
VPS53-217ENST00000575100 YIPF4Q9BSR8 244 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 CCDC8Q9H0W5 538 aaPredicted RBP8.12□□□□□ -1.11
VPS53-217ENST00000575100 PPP4R2Q9NY27 417 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 GTF2IRD1Q9UHL9 959 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 DDX19BQ9UMR2 479 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 LTBP3Q9NS15 1303 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 SCN4AP35499 1836 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 SLX4Q8IY92 1834 aa8.12□□□□□ -1.11
VPS53-217ENST00000575100 H0YIN7 160 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 NUDT7P0C024 238 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 TGFB3P10600 412 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 GTF2E1P29083 439 aaPredicted RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 ZNF280AP59817 542 aaPredicted RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 ITKQ08881 620 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 KRT72Q14CN4 511 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 PUM3Q15397 648 aaKnown RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 HLFQ16534 295 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 CXorf57Q6NSI4 855 aaKnown RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 LVRNQ6Q4G3 990 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 MMS22LQ6ZRQ5 1243 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 ARMCX6Q7L4S7 300 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 ANKRD23Q86SG2 305 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 ZBTB46Q86UZ6 589 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 JPH3Q8WXH2 748 aaPredicted RBP8.11□□□□□ -1.11
VPS53-217ENST00000575100 BCO2Q9BYV7 579 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 USP44Q9H0E7 712 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 TNKS2Q9H2K2 1166 aa8.11□□□□□ -1.11
VPS53-217ENST00000575100 PLCB1Q9NQ66 1216 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms