RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 A0A0G2JMZ2 1700 aa13.35□□□□□ -0.27
VPS53-207ENST00000570510 B4GALT4O60513 344 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 SUPT20HL2P0C7V6 817 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 TTF1Q15361 905 aaPredicted RBP13.34□□□□□ -0.27
VPS53-207ENST00000570510 FSCN1Q16658 493 aaKnown RBP13.34□□□□□ -0.27
VPS53-207ENST00000570510 ARMCX2Q7L311 632 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 SIAH1Q8IUQ4 282 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 GJD3Q8N144 294 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 SDR42E1Q8WUS8 393 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 SLC9A7Q96T83 725 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 SLF1Q9BQI6 1058 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 FTOQ9C0B1 505 aaKnown RBP eCLIP13.34□□□□□ -0.27
VPS53-207ENST00000570510 ANTXR1Q9H6X2 564 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 FBXO40Q9UH90 709 aa13.34□□□□□ -0.27
VPS53-207ENST00000570510 DBNLQ9UJU6 430 aaKnown RBP13.34□□□□□ -0.27
VPS53-207ENST00000570510 CHD7Q9P2D1 2997 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 IPO8O15397 1037 aaKnown RBP13.33□□□□□ -0.28
VPS53-207ENST00000570510 ADCY6O43306 1168 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 CYP2D6P10635 497 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 KCNA4P22459 653 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 EVX2Q03828 476 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 TTLL4Q14679 1199 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 TLK2Q86UE8 772 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 CCDC144CPQ8IYA2 1237 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 PRPF38AQ8NAV1 312 aaKnown RBP13.33□□□□□ -0.28
VPS53-207ENST00000570510 ARHGAP45Q92619 1136 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 ZBED2Q9BTP6 218 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 WNT8AQ9H1J5 351 aa13.33□□□□□ -0.28
VPS53-207ENST00000570510 DCP1AQ9NPI6 582 aaPredicted RBP13.33□□□□□ -0.28
VPS53-207ENST00000570510 PRRC2BQ5JSZ5 2229 aaKnown RBP13.33□□□□□ -0.28
VPS53-207ENST00000570510 DNAJC25-GNG10A0A024R161 153 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 EPOPA6NHQ4 379 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 DYNC1LI2O43237 492 aaPredicted RBP13.32□□□□□ -0.28
VPS53-207ENST00000570510 CDK8P49336 464 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 NHLH1Q02575 133 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 GRB10Q13322 594 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 TRMT2AQ8IZ69 625 aaKnown RBP13.32□□□□□ -0.28
VPS53-207ENST00000570510 SLC43A3Q8NBI5 491 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 RETREG2Q8NC44 543 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 PHOSPHO2Q8TCD6 241 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 TLR7Q9NYK1 1049 aaKnown RBP13.32□□□□□ -0.28
VPS53-207ENST00000570510 RIPK3Q9Y572 518 aa13.32□□□□□ -0.28
VPS53-207ENST00000570510 LRRC37A2A6NM11 1700 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 BCAR3O75815 825 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 KCNJ6P48051 423 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 PSMC6P62333 389 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 TAP1Q03518 808 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 REPS2Q8NFH8 660 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 KIFC2Q96AC6 838 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 RAVER2Q9HCJ3 691 aaKnown RBP13.31□□□□□ -0.28
VPS53-207ENST00000570510 CD320Q9NPF0 282 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 GPHNQ9NQX3 736 aaPredicted RBP13.31□□□□□ -0.28
VPS53-207ENST00000570510 HOMER2Q9NSB8 354 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 ISY1Q9ULR0 285 aaKnown RBP13.31□□□□□ -0.28
VPS53-207ENST00000570510 ZNF536O15090 1300 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 GBF1Q92538 1859 aa13.31□□□□□ -0.28
VPS53-207ENST00000570510 REV3LO60673 3130 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.3□□□□□ -0.28
VPS53-207ENST00000570510 ASB14A6NK59 587 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 PDE6AP16499 860 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 FAM47CQ5HY64 1035 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 HERC6Q8IVU3 1022 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 CHST13Q8NET6 341 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 FRAT1Q92837 279 aaPredicted RBP13.3□□□□□ -0.28
VPS53-207ENST00000570510 EAF2Q96CJ1 260 aaPredicted RBP13.3□□□□□ -0.28
VPS53-207ENST00000570510 AGBL1Q96MI9 1066 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 CRBNQ96SW2 442 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 NUP88Q99567 741 aaPredicted RBP13.3□□□□□ -0.28
VPS53-207ENST00000570510 KCNH6Q9H252 994 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 ALDH8A1Q9H2A2 487 aaPredicted RBP13.3□□□□□ -0.28
VPS53-207ENST00000570510 ATP8A2Q9NTI2 1148 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 COG6Q9Y2V7 657 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 ZNF532Q9HCE3 1301 aa13.3□□□□□ -0.28
VPS53-207ENST00000570510 CTAGE5O15320 804 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 CYP2C9P11712 490 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 KCNA5P22460 613 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 RFC2P35250 354 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 POLA2Q14181 598 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 AACSQ86V21 672 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 FAM178BQ8IXR5 827 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 LCORLQ8N3X6 602 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 CLUAP1Q96AJ1 413 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 FBXL18Q96ME1 805 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 UBE2ZQ9H832 354 aaPredicted RBP13.29□□□□□ -0.28
VPS53-207ENST00000570510 ARMT1Q9H993 441 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 LMCD1Q9NZU5 365 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 NOD1Q9Y239 953 aa13.29□□□□□ -0.28
VPS53-207ENST00000570510 MYO5AQ9Y4I1 1855 aaKnown RBP13.29□□□□□ -0.28
VPS53-207ENST00000570510 COL11A1P12107 1806 aaPredicted RBP13.28□□□□□ -0.28
VPS53-207ENST00000570510 ATP2A1O14983 1001 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 RARSP54136 660 aaKnown RBP13.28□□□□□ -0.28
VPS53-207ENST00000570510 NKX3-2P78367 333 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 ATP8B2P98198 1209 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 CNTN2Q02246 1040 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 IQSEC1Q6DN90 963 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 MIER1Q8N108 512 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 SSH3Q8TE77 659 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 GDPD5Q8WTR4 605 aa13.28□□□□□ -0.28
VPS53-207ENST00000570510 DNAJC2Q99543 621 aaKnown RBP13.28□□□□□ -0.28
VPS53-207ENST00000570510 TRMT13Q9NUP7 481 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms