RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DIRC2Q96SL1 478 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 ZHX1Q9UKY1 873 aaPredicted RBP4.09□□□□□ -1.75
VPS35-208ENST00000568612 SLC12A7Q9Y666 1083 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 MRVI1Q9Y6F6 885 aa4.09□□□□□ -1.75
VPS35-208ENST00000568612 CFAP65Q6ZU64 1925 aaKnown RBP4.09□□□□□ -1.76
VPS35-208ENST00000568612 A0A1W2PQH9 124 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 FITM1A5D6W6 292 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 ZNF503-AS2A6NEH8 195 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 GOLGA6L3A6NEY3 463 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 USP2O75604 605 aaPredicted RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 LETM1O95202 739 aaPredicted RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 HPXP02790 462 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 NCAPD3P42695 1498 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 TNNT2P45379 298 aaPredicted RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 SLC7A5Q01650 507 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 PPP2R5DQ14738 602 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 TCEAL1Q15170 157 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 ZNF648Q5T619 568 aaPredicted RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 ADAT2Q7Z6V5 191 aaKnown RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 SPPL2CQ8IUH8 684 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 SIRT2Q8IXJ6 389 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 NAT16Q8N8M0 369 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 LINC00116Q8NCU8 138 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 ADCY4Q8NFM4 1077 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 ZNF526Q8TF50 670 aaPredicted RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 SHDQ96IW2 340 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.08□□□□□ -1.764e-6■■■□□ 14.6
VPS35-208ENST00000568612 RNF32Q9H0A6 362 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 NOL6Q9H6R4 1146 aaKnown RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 LTBP3Q9NS15 1303 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 GEMIN8Q9NWZ8 242 aaKnown RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 FAM53CQ9NYF3 392 aa4.08□□□□□ -1.76
VPS35-208ENST00000568612 ZNF214Q9UL59 606 aaPredicted RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 LAS1LQ9Y4W2 734 aaKnown RBP4.08□□□□□ -1.76
VPS35-208ENST00000568612 H0Y8X5 98 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 SHOXO15266 292 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 FARP2O94887 1054 aaPredicted RBP4.07□□□□□ -1.76
VPS35-208ENST00000568612 GSTM1P09488 218 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 ITGA4P13612 1032 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 ATF4P18848 351 aaPredicted RBP4.07□□□□□ -1.76
VPS35-208ENST00000568612 CD247P20963 164 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 DNAJA1P31689 397 aaKnown RBP4.07□□□□□ -1.76
VPS35-208ENST00000568612 CTSKP43235 329 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 GALK1P51570 392 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 CHRNEQ04844 493 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 PKN1Q16512 942 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 HSP90AB3PQ58FF7 597 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 HEATR6Q6AI08 1181 aaKnown RBP4.07□□□□□ -1.76
VPS35-208ENST00000568612 VHLLQ6RSH7 139 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 PRR23BQ6ZRT6 265 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 CEP128Q6ZU80 1094 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 KSR1Q8IVT5 923 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 LILRA2Q8N149 483 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 FIBCD1Q8N539 461 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 ANKS4BQ8N8V4 417 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 PPP1R14AQ96A00 147 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 ZDHHC15Q96MV8 337 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 SLC38A3Q99624 504 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 GTPBP4Q9BZE4 634 aaKnown RBP4.07□□□□□ -1.76
VPS35-208ENST00000568612 GBP3Q9H0R5 595 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 NSUN3Q9H649 340 aaKnown RBP4.07□□□□□ -1.76
VPS35-208ENST00000568612 PHAXQ9H814 394 aaKnown RBP4.07□□□□□ -1.76
VPS35-208ENST00000568612 GP6Q9HCN6 339 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP4.07□□□□□ -1.76
VPS35-208ENST00000568612 STRIP2Q9ULQ0 834 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 SUGT1Q9Y2Z0 365 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 ZNF451Q9Y4E5 1061 aa4.07□□□□□ -1.76
VPS35-208ENST00000568612 PEG3Q9GZU2 1588 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 TMEM82A0PJX8 343 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 TCERG1O14776 1098 aaKnown RBP4.06□□□□□ -1.76
VPS35-208ENST00000568612 GSNP06396 782 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 CD3EP07766 207 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 VAV1P15498 845 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 BMP8BP34820 402 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 PDE6BP35913 854 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 TERF1P54274 439 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 ZNF445P59923 1031 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 TIGD5Q53EQ6 642 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 DNTTIP2Q5QJE6 756 aaKnown RBP4.06□□□□□ -1.76
VPS35-208ENST00000568612 LARP1BQ659C4 914 aaKnown RBP4.06□□□□□ -1.76
VPS35-208ENST00000568612 KIAA1211LQ6NV74 962 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 FAM169BQ8N8A8 192 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 C19orf47Q8N9M1 422 aaKnown RBP4.06□□□□□ -1.76
VPS35-208ENST00000568612 FRAT1Q92837 279 aaPredicted RBP4.06□□□□□ -1.76
VPS35-208ENST00000568612 MAP6Q96JE9 813 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 FGD4Q96M96 766 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 HAUS7Q99871 368 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 EPB41L4BQ9H329 900 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 AP5S1Q9NUS5 200 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 EBF1Q9UH73 591 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 SF3B6Q9Y3B4 125 aaKnown RBP4.06□□□□□ -1.76
VPS35-208ENST00000568612 PRDM2Q13029 1718 aa4.06□□□□□ -1.76
VPS35-208ENST00000568612 A0A1W2PQ27 194 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 A0A1W2PQ64 194 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 A0A1W2PQC6 194 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 A0A1W2PQD8 194 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 PLEKHD1A6NEE1 506 aa4.05□□□□□ -1.76
VPS35-208ENST00000568612 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.05□□□□□ -1.76
VPS35-208ENST00000568612 SMAD7O15105 426 aaKnown RBP4.05□□□□□ -1.76
VPS35-208ENST00000568612 PSPNO60542 156 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms