RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 APBA2Q99767 749 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 SLC12A9Q9BXP2 914 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 ADAMTS10Q9H324 1103 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 NOL6Q9H6R4 1146 aaKnown RBP5.23□□□□□ -1.57
VPS35-203ENST00000562420 MSRB2Q9Y3D2 182 aa5.23□□□□□ -1.57
VPS35-203ENST00000562420 SUSD5O60279 629 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 LRP10Q7Z4F1 713 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 WAPLQ7Z5K2 1190 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 BVESQ8NE79 360 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 ST13P5Q8NFI4 369 aaPredicted RBP5.22□□□□□ -1.57
VPS35-203ENST00000562420 HNRNPLLQ8WVV9 542 aaKnown RBP5.22□□□□□ -1.57
VPS35-203ENST00000562420 BRF1Q92994 677 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 KIRREL1Q96J84 757 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 ERVK13-1Q9NX77 482 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 MINPP1Q9UNW1 487 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 EMC9Q9Y3B6 208 aa5.22□□□□□ -1.57
VPS35-203ENST00000562420 A0A1W2PQ45 241 aaPredicted RBP5.21□□□□□ -1.58
VPS35-203ENST00000562420 A0A1W2PQY0 241 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 FGF10O15520 208 aaPredicted RBP5.21□□□□□ -1.58
VPS35-203ENST00000562420 NRDCO43847 1150 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 DDAH1O94760 285 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 GJB6O95452 261 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 GLI1P08151 1106 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 RPL10P27635 214 aaKnown RBP5.21□□□□□ -1.58
VPS35-203ENST00000562420 AMPD2Q01433 879 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 EEF1DP3Q658K8 133 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 MRM1Q6IN84 353 aaKnown RBP5.21□□□□□ -1.58
VPS35-203ENST00000562420 TRIM59Q8IWR1 403 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 MYLIPQ8WY64 445 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 FAM168AQ92567 244 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 HHIPL1Q96JK4 782 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 MRGPRX3Q96LB0 322 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 FGD4Q96M96 766 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 CWC22Q9HCG8 908 aaKnown RBP5.21□□□□□ -1.58
VPS35-203ENST00000562420 FAM86C1Q9NVL1 165 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 FAM53CQ9NYF3 392 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 SIRPGQ9P1W8 387 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 APEX2Q9UBZ4 518 aa5.21□□□□□ -1.58
VPS35-203ENST00000562420 TRBV23OR9-2A0A075B6M9 112 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 FADS2P1A8MWK0 482 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 B2RBV5 119 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 MEIS1O00470 390 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 NOP56O00567 594 aaKnown RBP5.2□□□□□ -1.58
VPS35-203ENST00000562420 AURKAO14965 403 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 CEBPAP49715 358 aaPredicted RBP5.2□□□□□ -1.58
VPS35-203ENST00000562420 HK2P52789 917 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 CORO7P57737 925 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 SERINC3Q13530 473 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 KCNMB1Q16558 191 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 ADAT2Q7Z6V5 191 aaKnown RBP5.2□□□□□ -1.58
VPS35-203ENST00000562420 SLCO6A1Q86UG4 719 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 CELF2-AS1Q8N7Q2 184 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 ABHD4Q8TB40 342 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 MICAL1Q8TDZ2 1067 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 SGSM3Q96HU1 749 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 ZDHHC15Q96MV8 337 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 FCRL3Q96P31 734 aaPredicted RBP5.2□□□□□ -1.58
VPS35-203ENST00000562420 TRIM55Q9BYV6 548 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 EBF1Q9UH73 591 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 ZMYM5Q9UJ78 669 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 AKT3Q9Y243 479 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 SUGT1Q9Y2Z0 365 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 BACE2Q9Y5Z0 518 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 CARMIL2Q6F5E8 1435 aa5.2□□□□□ -1.58
VPS35-203ENST00000562420 AGRPO00253 132 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 U2SURPO15042 1029 aaKnown RBP5.19□□□□□ -1.58
VPS35-203ENST00000562420 FKTNO75072 461 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 CAPNS1P04632 268 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 CD3EP07766 207 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 SLC10A6Q3KNW5 377 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 TMEM67Q5HYA8 995 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 HLA-DQA1Q5Y7H0 255 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 POU5F2Q8N7G0 328 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 ADCY4Q8NFM4 1077 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 MKL1Q969V6 931 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 CCDC140Q96MF4 163 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 CDADC1Q9BWV3 514 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 KRTAP4-11Q9BYQ6 195 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 CCDC113Q9H0I3 377 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 CRTAC1Q9NQ79 661 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 AP5S1Q9NUS5 200 aa5.19□□□□□ -1.58
VPS35-203ENST00000562420 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.19□□□□□ -1.58
VPS35-203ENST00000562420 IQCA1LA6NCM1 817 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 WTIPA6NIX2 430 aaPredicted RBP5.18□□□□□ -1.58
VPS35-203ENST00000562420 NOTOA8MTQ0 251 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 TBC1D8O95759 1140 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 SCG5P05408 212 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 GSTM1P09488 218 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 GTF2F1P35269 517 aaKnown RBP eCLIP5.18□□□□□ -1.58
VPS35-203ENST00000562420 RASGRF1Q13972 1273 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 PPP2R5DQ14738 602 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 TESK1Q15569 626 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 FYB2Q5VWT5 728 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 GALNT18Q6P9A2 607 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 NLRX1Q86UT6 975 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 ZNF227Q86WZ6 799 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 IRF2BP1Q8IU81 584 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 COPS5Q92905 334 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 PTCHD1Q96NR3 888 aa5.18□□□□□ -1.58
VPS35-203ENST00000562420 SLC6A17Q9H1V8 727 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms