RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 EPHX2P34913 555 aa24.33■■□□□ 1.48
CLN3-209ENST00000561689 ADCY7P51828 1080 aa24.33■■□□□ 1.48
CLN3-209ENST00000561689 CAMK4Q16566 473 aa24.33■■□□□ 1.48
CLN3-209ENST00000561689 CCDC73Q6ZRK6 1079 aa24.33■■□□□ 1.48
CLN3-209ENST00000561689 BIN2Q9UBW5 565 aaPredicted RBP24.33■■□□□ 1.48
CLN3-209ENST00000561689 PRR12Q9ULL5 1215 aa24.33■■□□□ 1.48
CLN3-209ENST00000561689 TRAPPC10P48553 1259 aa24.32■■□□□ 1.48
CLN3-209ENST00000561689 KLRG1Q96E93 195 aa24.32■■□□□ 1.48
CLN3-209ENST00000561689 PCDHA1Q9Y5I3 950 aa24.32■■□□□ 1.48
CLN3-209ENST00000561689 GOLGA6L3A6NEY3 463 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 SNW1Q13573 536 aaKnown RBP24.31■■□□□ 1.48
CLN3-209ENST00000561689 DGKZQ13574 1117 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 INF2Q27J81 1249 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 JAKMIP3Q5VZ66 844 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 PPP1R18Q6NYC8 613 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 REXO1Q8N1G1 1221 aaKnown RBP24.31■■□□□ 1.48
CLN3-209ENST00000561689 KRI1Q8N9T8 703 aaKnown RBP24.31■■□□□ 1.48
CLN3-209ENST00000561689 TMEM260Q9NX78 707 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 NDUFA8P51970 172 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 FAM160A1Q05DH4 1040 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 KRT26Q7Z3Y9 468 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 NUP62CLQ9H1M0 184 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 PICK1Q9NRD5 415 aa24.31■■□□□ 1.48
CLN3-209ENST00000561689 DDX19AQ9NUU7 478 aaKnown RBP24.31■■□□□ 1.48
CLN3-209ENST00000561689 CMA1P23946 247 aa24.3■■□□□ 1.48
CLN3-209ENST00000561689 MCM7P33993 719 aa24.3■■□□□ 1.48
CLN3-209ENST00000561689 GRIN1Q05586 938 aa24.3■■□□□ 1.48
CLN3-209ENST00000561689 SHC4Q6S5L8 630 aa24.3■■□□□ 1.48
CLN3-209ENST00000561689 SAMD1Q6SPF0 538 aaPredicted RBP24.3■■□□□ 1.48
CLN3-209ENST00000561689 USP50Q70EL3 339 aaPredicted RBP24.3■■□□□ 1.48
CLN3-209ENST00000561689 ENGASEQ8NFI3 743 aa24.3■■□□□ 1.48
CLN3-209ENST00000561689 KIFC2Q96AC6 838 aa24.3■■□□□ 1.48
CLN3-209ENST00000561689 KIAA1683Q9H0B3 1180 aa24.3■■□□□ 1.48
CLN3-209ENST00000561689 FBXO2Q9UK22 296 aaPredicted RBP24.3■■□□□ 1.48
CLN3-209ENST00000561689 ZC3H4Q9UPT8 1303 aaKnown RBP24.3■■□□□ 1.48
CLN3-209ENST00000561689 FSD2A1L4K1 749 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 CUTAO60888 179 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 PTPRAP18433 802 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 MTMR2Q13614 643 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 KRT25Q7Z3Z0 450 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 AMNQ9BXJ7 453 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 RIC8AQ9NPQ8 531 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 PTPREP23469 700 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 SPP2Q13103 211 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 USH1GQ495M9 461 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 LRSAM1Q6UWE0 723 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 CHURC1Q8WUH1 139 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 CLSTN2Q9H4D0 955 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 PSTPIP2Q9H939 334 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 FBXO28Q9NVF7 368 aa24.29■■□□□ 1.48
CLN3-209ENST00000561689 TAL1P17542 331 aaPredicted RBP24.28■■□□□ 1.48
CLN3-209ENST00000561689 PTGDRQ13258 359 aa24.28■■□□□ 1.48
CLN3-209ENST00000561689 NONOQ15233 471 aaKnown RBP eCLIP24.28■■□□□ 1.48
CLN3-209ENST00000561689 UBE2SQ16763 222 aa24.28■■□□□ 1.48
CLN3-209ENST00000561689 SPECC1Q5M775 1068 aa24.28■■□□□ 1.48
CLN3-209ENST00000561689 FBXO11Q86XK2 927 aa24.28■■□□□ 1.48
CLN3-209ENST00000561689 FMR1NBQ8N0W7 255 aaPredicted RBP24.28■■□□□ 1.48
CLN3-209ENST00000561689 TNMDQ9H2S6 317 aa24.28■■□□□ 1.48
CLN3-209ENST00000561689 USP2O75604 605 aaPredicted RBP24.27■■□□□ 1.48
CLN3-209ENST00000561689 LETM1O95202 739 aaPredicted RBP24.27■■□□□ 1.48
CLN3-209ENST00000561689 PFKFB1P16118 471 aa24.27■■□□□ 1.48
CLN3-209ENST00000561689 EAPPQ56P03 285 aaPredicted RBP24.27■■□□□ 1.48
CLN3-209ENST00000561689 CUL5Q93034 780 aa24.27■■□□□ 1.48
CLN3-209ENST00000561689 SRPRBQ9Y5M8 271 aaKnown RBP24.27■■□□□ 1.48
CLN3-209ENST00000561689 ATAD5Q96QE3 1844 aa24.27■■□□□ 1.48
CLN3-209ENST00000561689 BMP15O95972 392 aa24.27■■□□□ 1.48
CLN3-209ENST00000561689 MRPL12P52815 198 aaKnown RBP24.27■■□□□ 1.48
CLN3-209ENST00000561689 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.27■■□□□ 1.48
CLN3-209ENST00000561689 FEM1BQ9UK73 627 aa24.27■■□□□ 1.48
CLN3-209ENST00000561689 ZHX2Q9Y6X8 837 aa24.27■■□□□ 1.48
CLN3-209ENST00000561689 RESP18Q5W5W9 173 aa24.26■■□□□ 1.47
CLN3-209ENST00000561689 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.26■■□□□ 1.47
CLN3-209ENST00000561689 LPAR1Q92633 364 aa24.26■■□□□ 1.47
CLN3-209ENST00000561689 WDR18Q9BV38 432 aa24.26■■□□□ 1.47
CLN3-209ENST00000561689 TAF1DQ9H5J8 278 aaPredicted RBP24.26■■□□□ 1.47
CLN3-209ENST00000561689 EMILIN3Q9NT22 766 aa24.26■■□□□ 1.47
CLN3-209ENST00000561689 POLR2AP24928 1970 aaKnown RBP24.26■■□□□ 1.47
CLN3-209ENST00000561689 POTECB2RU33 542 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 KINO60870 393 aaKnown RBP24.25■■□□□ 1.47
CLN3-209ENST00000561689 CCDC174Q6PII3 467 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 FAM160B2Q86V87 743 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 CKAP2LQ8IYA6 745 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 ZNF280CQ8ND82 737 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 TBCKQ8TEA7 893 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 WDR46O15213 610 aaKnown RBP24.25■■□□□ 1.47
CLN3-209ENST00000561689 PLA2G6O60733 806 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 ATP2C1P98194 919 aaPredicted RBP24.25■■□□□ 1.47
CLN3-209ENST00000561689 ZC3H15Q8WU90 426 aaKnown RBP24.25■■□□□ 1.47
CLN3-209ENST00000561689 CSRNP2Q9H175 543 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 AS3MTQ9HBK9 375 aa24.25■■□□□ 1.47
CLN3-209ENST00000561689 USP17L15C9J2P7 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 USP17L13C9JLJ4 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 USP17L11C9JVI0 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 USP17L18D6R9N7 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 USP17L22D6RA61 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 USP17L17D6RBQ6 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 USP17L19D6RCP7 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 USP17L20D6RJB6 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 USP17L24Q0WX57 530 aa24.24■■□□□ 1.47
CLN3-209ENST00000561689 MAP3K11Q16584 847 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms