RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 PTGER2P43116 358 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 NASPP49321 788 aaPredicted RBP6.17□□□□□ -1.42
VPS13C-209ENST00000560637 USP14P54578 494 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 PPP4CP60510 307 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 PTGDRQ13258 359 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 SPDYE2Q495Y8 402 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 ASPRV1Q53RT3 343 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 C16orf86Q6ZW13 317 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 TMTC3Q6ZXV5 915 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 SYCP3Q8IZU3 236 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 CPLX3Q8WVH0 158 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 CDCA5Q96FF9 252 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 BICD1Q96G01 975 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 SUGCTQ9HAC7 445 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 MLXIPQ9HAP2 919 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 LRWD1Q9UFC0 647 aa6.17□□□□□ -1.42
VPS13C-209ENST00000560637 NEMFO60524 1076 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 GAS7O60861 476 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 IFNAR1P17181 557 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 CYP2B6P20813 491 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 CAP2P40123 477 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 ALX1Q15699 326 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 PLA2G4DQ86XP0 818 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 SLF1Q9BQI6 1058 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 CPA4Q9UI42 421 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 MRPL11Q9Y3B7 192 aaKnown RBP6.16□□□□□ -1.42
VPS13C-209ENST00000560637 PCDHB6Q9Y5E3 794 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 GLTPD2A6NH11 291 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 GTPBP6O43824 516 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-209ENST00000560637 TPM2P07951 284 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 KCNA3P22001 575 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 OSBPP22059 807 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 MSNP26038 577 aaKnown RBP6.16□□□□□ -1.42
VPS13C-209ENST00000560637 SHMT1P34896 483 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 PDE4DQ08499 809 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 RILPL1Q5EBL4 403 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 NLRX1Q86UT6 975 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 ANKRD13AQ8IZ07 590 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 KRI1Q8N9T8 703 aaKnown RBP6.16□□□□□ -1.42
VPS13C-209ENST00000560637 TTC16Q8NEE8 873 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 KCNG4Q8TDN1 519 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 LEO1Q8WVC0 666 aaPredicted RBP6.16□□□□□ -1.42
VPS13C-209ENST00000560637 OPTNQ96CV9 577 aa6.16□□□□□ -1.42
VPS13C-209ENST00000560637 TBCAO75347 108 aaKnown RBP6.15□□□□□ -1.42
VPS13C-209ENST00000560637 PDHBP11177 359 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 STAT3P40763 770 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 UBE2HP62256 183 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 PABPC4Q13310 644 aaKnown RBP eCLIP6.15□□□□□ -1.423e-8■■□□□ 11.4
VPS13C-209ENST00000560637 WWC2Q6AWC2 1192 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 GRAMD1CQ8IYS0 662 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 METTL13Q8N6R0 699 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 PPP1R13LQ8WUF5 828 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 TTC14Q96N46 770 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 TRERF1Q96PN7 1200 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 RMDN3Q96TC7 470 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 LLPHQ9BRT6 129 aaKnown RBP6.15□□□□□ -1.42
VPS13C-209ENST00000560637 DNAJC25Q9H1X3 360 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 MYO9BQ13459 2157 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 ABCB11O95342 1321 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 SBF2Q86WG5 1849 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 CCDC169A6NNP5 214 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 IRF6O14896 467 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 OFD1O75665 1012 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 TRPA1O75762 1119 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 PGK2P07205 417 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 CA8P35219 290 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 EXOSC10Q01780 885 aaKnown RBP6.15□□□□□ -1.42
VPS13C-209ENST00000560637 TRAF1Q13077 416 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 STIM1Q13586 685 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 KARSQ15046 597 aaKnown RBP6.15□□□□□ -1.42
VPS13C-209ENST00000560637 RCSD1Q6JBY9 416 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 RNF207Q6ZRF8 634 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 NEK8Q86SG6 692 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 LDHDQ86WU2 507 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 PRPF38AQ8NAV1 312 aaKnown RBP6.15□□□□□ -1.42
VPS13C-209ENST00000560637 ERMNQ8TAM6 284 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 ZNF592Q92610 1267 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 MPHOSPH6Q99547 160 aaKnown RBP6.15□□□□□ -1.42
VPS13C-209ENST00000560637 RNF26Q9BY78 433 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-209ENST00000560637 IL17RBQ9NRM6 502 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 MAGEC2Q9UBF1 373 aaPredicted RBP6.15□□□□□ -1.42
VPS13C-209ENST00000560637 PRR12Q9ULL5 1215 aa6.15□□□□□ -1.42
VPS13C-209ENST00000560637 CICQ96RK0 1608 aaPredicted RBP6.15□□□□□ -1.43
VPS13C-209ENST00000560637 CASZ1Q86V15 1759 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 ORC4O43929 436 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 PCP11498 1178 aaKnown RBP6.15□□□□□ -1.43
VPS13C-209ENST00000560637 CASP1P29466 404 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 VGLL4Q14135 290 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 KIF22Q14807 665 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 TSR1Q2NL82 804 aaKnown RBP6.15□□□□□ -1.43
VPS13C-209ENST00000560637 KRT25Q7Z3Z0 450 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 BRAPQ7Z569 592 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 NELFCDQ8IXH7 590 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 NKX2-3Q8TAU0 364 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 TBC1D5Q92609 795 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 DPF2Q92785 391 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 SMARCE1Q969G3 411 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 LZTS2Q9BRK4 669 aa6.15□□□□□ -1.43
VPS13C-209ENST00000560637 NAT10Q9H0A0 1025 aaKnown RBP6.15□□□□□ -1.43
VPS13C-209ENST00000560637 TAF1DQ9H5J8 278 aaPredicted RBP6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms