RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 FAM110CQ1W6H9 321 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 RAB11FIP4Q86YS3 637 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 WASF1Q92558 559 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 GTF3C6Q969F1 213 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 ATG4CQ96DT6 458 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 RNF26Q9BY78 433 aaPredicted RBP10.69□□□□□ -0.7
LDLR-210ENST00000559340 RANBP17Q9H2T7 1088 aaKnown RBP10.69□□□□□ -0.7
LDLR-210ENST00000559340 SLC38A10Q9HBR0 1119 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 CWC22Q9HCG8 908 aaKnown RBP10.69□□□□□ -0.7
LDLR-210ENST00000559340 FBXO28Q9NVF7 368 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 RNF186Q9NXI6 227 aa10.69□□□□□ -0.7
LDLR-210ENST00000559340 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.69□□□□□ -0.7
LDLR-210ENST00000559340 hCG_1984214I3L0E3 225 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 ATP2A1O14983 1001 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 ZBTB5O15062 677 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 PRPF3O43395 683 aaKnown RBP10.68□□□□□ -0.7
LDLR-210ENST00000559340 CYP2C8P10632 490 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 XBP1P17861 261 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 CDC27P30260 824 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 STAT3P40763 770 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 HMGN5P82970 282 aaKnown RBP10.68□□□□□ -0.7
LDLR-210ENST00000559340 SCRN1Q12765 414 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 CRHR2Q13324 411 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 PLS1Q14651 629 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 CDC37Q16543 378 aaPredicted RBP10.68□□□□□ -0.7
LDLR-210ENST00000559340 NOM1Q5C9Z4 860 aaKnown RBP10.68□□□□□ -0.7
LDLR-210ENST00000559340 FBXO11Q86XK2 927 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 FAM177A1Q8N128 213 aaPredicted RBP10.68□□□□□ -0.7
LDLR-210ENST00000559340 SRBD1Q8N5C6 995 aaKnown RBP10.68□□□□□ -0.7
LDLR-210ENST00000559340 ZNF713Q8N859 430 aaPredicted RBP10.68□□□□□ -0.7
LDLR-210ENST00000559340 SHCBP1Q8NEM2 672 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 CCDC12Q8WUD4 166 aaPredicted RBP10.68□□□□□ -0.7
LDLR-210ENST00000559340 MTMR8Q96EF0 704 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 TMX3Q96JJ7 454 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 PAGR1Q9BTK6 254 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 AMNQ9BXJ7 453 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 TEX13BQ9BXU2 312 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 MAF1Q9H063 256 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 JMJD4Q9H9V9 463 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 MORF4L1Q9UBU8 362 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 FBXO40Q9UH90 709 aa10.68□□□□□ -0.7
LDLR-210ENST00000559340 ABCB11O95342 1321 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 K7ELQ4 463 aaPredicted RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 PLEKHA8P1O95397 391 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 DEXIO95424 95 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 FMNL1O95466 1100 aaPredicted RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 ICAM1P05362 532 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 HSP90AA1P07900 732 aaKnown RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 ANP32AP39687 249 aaKnown RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 ERVK-9P63128 1117 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 ERVK-24P63145 666 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 CCDC174Q6PII3 467 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 C17orf99Q6UX52 265 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 HOMER1Q86YM7 354 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 RIOX2Q8IUF8 465 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 TEX2Q8IWB9 1127 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 CCDC83Q8IWF9 413 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 CPXCR1Q8N123 301 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 CCDC82Q8N4S0 544 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 SAMD3Q8N6K7 520 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 ANKRD13CQ8N6S4 541 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 NECAB1Q8N987 351 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 CHST13Q8NET6 341 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 PIGSQ96S52 555 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 SLC26A6Q9BXS9 759 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 SPATC1LQ9H0A9 340 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 GLT8D2Q9H1C3 349 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 MROH8Q9H579 483 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 NCOA5Q9HCD5 579 aaKnown RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 FAM217BQ9NTX9 383 aaPredicted RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 RBPJLQ9UBG7 517 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 DAXXQ9UER7 740 aaPredicted RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 CCPG1Q9ULG6 757 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 MRPL11Q9Y3B7 192 aaKnown RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 V9GY48 417 aaPredicted RBP10.67□□□□□ -0.7
LDLR-210ENST00000559340 A0A0G2JMZ2 1700 aa10.67□□□□□ -0.7
LDLR-210ENST00000559340 CNTNAP5Q8WYK1 1306 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 STK36Q9NRP7 1315 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 STRNO43815 780 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 TBC1D8O95759 1140 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 BCRP11274 1271 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 HOXD10P28358 340 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 MAPK4P31152 587 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 SP3Q02447 781 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 TMEM132BQ14DG7 1078 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 NTRK3Q16288 839 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 QRICH1Q2TAL8 776 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 SNRNP48Q6IEG0 339 aaKnown RBP10.66□□□□□ -0.7
LDLR-210ENST00000559340 RASGRP2Q7LDG7 609 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 MCF2L2Q86YR7 1114 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 FAM184AQ8NB25 1140 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 ERO1AQ96HE7 468 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 RAVER2Q9HCJ3 691 aaKnown RBP10.66□□□□□ -0.7
LDLR-210ENST00000559340 ORC3Q9UBD5 711 aaPredicted RBP10.66□□□□□ -0.7
LDLR-210ENST00000559340 CPA4Q9UI42 421 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 IVNS1ABPQ9Y6Y0 642 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 CASP8AP2Q9UKL3 1982 aa10.66□□□□□ -0.7
LDLR-210ENST00000559340 ADGRA2Q96PE1 1338 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 GPR25O00155 361 aa10.65□□□□□ -0.7
LDLR-210ENST00000559340 CYTH3O43739 400 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms