RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 HGSO14964 777 aaPredicted RBP12.64□□□□□ -0.39
LDLR-208ENST00000558518 GOLGA8HP0CJ92 632 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 HNRNPH1P31943 449 aaKnown RBP12.64□□□□□ -0.39
LDLR-208ENST00000558518 AMPD2Q01433 879 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 CCDC155Q8N6L0 562 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 TSEN2Q8NCE0 465 aaKnown RBP12.64□□□□□ -0.39
LDLR-208ENST00000558518 EPB41L5Q9HCM4 733 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 CD248Q9HCU0 757 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 TBC1D7Q9P0N9 293 aa12.64□□□□□ -0.39
LDLR-208ENST00000558518 USP17L12C9JPN9 530 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 USP17L21D6R901 530 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 FCER1AP12319 257 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 NNTQ13423 1086 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 E2F5Q15329 346 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 NT5DC1Q5TFE4 455 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 KIRREL3Q8IZU9 778 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 ZBTB38Q8NAP3 1195 aaPredicted RBP12.63□□□□□ -0.39
LDLR-208ENST00000558518 RNF41Q9H4P4 317 aaPredicted RBP12.63□□□□□ -0.39
LDLR-208ENST00000558518 LTN1O94822 1766 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 MYH10P35580 1976 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 MAGEB6P1A0A0J9YX57 407 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 LETM2Q2VYF4 491 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 IQCEQ6IPM2 695 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 CNOT6LQ96LI5 555 aaKnown RBP12.63□□□□□ -0.39
LDLR-208ENST00000558518 TRIM31Q9BZY9 425 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 GOLPH3Q9H4A6 298 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 RWDD2AQ9UIY3 292 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 STX8Q9UNK0 236 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 MEGF6O75095 1541 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 AGPSO00116 658 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 GTPBP6O43824 516 aaPredicted RBP12.63□□□□□ -0.39
LDLR-208ENST00000558518 UQCRFS1P1P0C7P4 283 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 PBX1P40424 430 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 TUBB2AQ13885 445 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 LRRC41Q15345 812 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 PUM3Q15397 648 aaKnown RBP12.63□□□□□ -0.39
LDLR-208ENST00000558518 MCTP2Q6DN12 878 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 DTHD1Q6ZMT9 781 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 OR2W6PQ8NHA6 318 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 GIMAP7Q8NHV1 300 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 FERMT2Q96AC1 680 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 TUBB2BQ9BVA1 445 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 EXOC1Q9NV70 894 aa12.63□□□□□ -0.39
LDLR-208ENST00000558518 FAM237AA0A1B0GTK4 181 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 NUTM2BA6NNL0 878 aaPredicted RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 NUTM2EB1AL46 878 aaPredicted RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 MARCH6O60337 910 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 EIF4A3P38919 411 aaKnown RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 MAGEA1P43355 309 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 PPFIA1Q13136 1202 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 CT47A1Q5JQC4 288 aaPredicted RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 ZNF658Q5TYW1 1059 aaPredicted RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 WDR59Q6PJI9 974 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 ZSCAN10Q96SZ4 725 aaPredicted RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 PRPF6O94906 941 aaKnown RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 TRADDQ15628 312 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 ZNF579Q8NAF0 562 aaKnown RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 KRT12Q99456 494 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 OPA1O60313 960 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 CYP2D6P10635 497 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 CARSP49589 748 aaKnown RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 CDR1P51861 262 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 CEP85LQ5SZL2 805 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 GBP6Q6ZN66 633 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 CCDC91Q7Z6B0 441 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 ADGRA1Q86SQ6 560 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 FBXL16Q8N461 479 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 RMND1Q9NWS8 449 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 LIMA1Q9UHB6 759 aaKnown RBP12.62□□□□□ -0.39
LDLR-208ENST00000558518 FAM184BQ9ULE4 1060 aa12.62□□□□□ -0.39
LDLR-208ENST00000558518 PCCAP05165 728 aaPredicted RBP12.61□□□□□ -0.39
LDLR-208ENST00000558518 VAV2P52735 878 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 GFPT1Q06210 699 aaPredicted RBP12.61□□□□□ -0.39
LDLR-208ENST00000558518 WDR93Q6P2C0 686 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 TMTC2Q8N394 836 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 EHBP1Q8NDI1 1231 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 SPATA4Q8NEY3 305 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 LPIN2Q92539 896 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 ALS2CR12Q96Q35 445 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 GOLGA6L7A0A1B0GV03 622 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 STARD3NLO95772 234 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 FAM153BP0C7A2 387 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 PKN1Q16512 942 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 FAM153CQ494X1 144 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 CCDC47Q96A33 483 aaKnown RBP12.61□□□□□ -0.39
LDLR-208ENST00000558518 RBM12Q9NTZ6 932 aaKnown RBP12.61□□□□□ -0.39
LDLR-208ENST00000558518 MYO1AQ9UBC5 1043 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 FAM153AQ9UHL3 310 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 LGALS16A8MUM7 142 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 H7C1D1 291 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 TRIM14Q14142 442 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 IL17AQ16552 155 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 ADAT2Q7Z6V5 191 aaKnown RBP12.61□□□□□ -0.39
LDLR-208ENST00000558518 NLRP10Q86W26 655 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 SRBD1Q8N5C6 995 aaKnown RBP12.61□□□□□ -0.39
LDLR-208ENST00000558518 CCDC114Q96M63 670 aa12.61□□□□□ -0.39
LDLR-208ENST00000558518 GOLGA6L10A6NI86 522 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 TMCO5BA8MYB1 307 aa12.6□□□□□ -0.39
LDLR-208ENST00000558518 HEXIM1O94992 359 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms