RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 LARP6Q9BRS8 491 aaKnown RBP12.15□□□□□ -0.46
LRRC28-204ENST00000558172 TEX13BQ9BXU2 312 aa12.15□□□□□ -0.46
LRRC28-204ENST00000558172 SPATC1LQ9H0A9 340 aa12.15□□□□□ -0.46
LRRC28-204ENST00000558172 VAT1LQ9HCJ6 419 aa12.15□□□□□ -0.46
LRRC28-204ENST00000558172 TXNRD2Q9NNW7 524 aa12.15□□□□□ -0.46
LRRC28-204ENST00000558172 SH2B1Q9NRF2 756 aaPredicted RBP12.15□□□□□ -0.46
LRRC28-204ENST00000558172 FAM217BQ9NTX9 383 aaPredicted RBP12.15□□□□□ -0.46
LRRC28-204ENST00000558172 RBM27Q9P2N5 1060 aaKnown RBP12.15□□□□□ -0.46
LRRC28-204ENST00000558172 ZNF214Q9UL59 606 aaPredicted RBP12.15□□□□□ -0.46
LRRC28-204ENST00000558172 PLXNB2O15031 1838 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 PNMA6FA0A0J9YX94 578 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 CPLX1O14810 134 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 ZBTB5O15062 677 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 CYTH3O43739 400 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 FKTNO75072 461 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 CDKL5O76039 1030 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 PLEKHA8P1O95397 391 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 ICAM1P05362 532 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 IFNAR1P17181 557 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 CTCFP49711 727 aaPredicted RBP12.14□□□□□ -0.47
LRRC28-204ENST00000558172 STK3Q13188 491 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 PLS1Q14651 629 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 CDC37Q16543 378 aaPredicted RBP12.14□□□□□ -0.47
LRRC28-204ENST00000558172 ME3Q16798 604 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 TKFCQ3LXA3 575 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 RIOX2Q8IUF8 465 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 CPXCR1Q8N123 301 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 RRP36Q96EU6 259 aaKnown RBP12.14□□□□□ -0.47
LRRC28-204ENST00000558172 ERO1AQ96HE7 468 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 CPVLQ9H3G5 476 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 MROH8Q9H579 483 aa12.14□□□□□ -0.47
LRRC28-204ENST00000558172 SEC63Q9UGP8 760 aaKnown RBP12.14□□□□□ -0.47
LRRC28-204ENST00000558172 ZNF536O15090 1300 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 MAPK4P31152 587 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 LACTBP83111 547 aaPredicted RBP12.13□□□□□ -0.47
LRRC28-204ENST00000558172 AKAP17AQ02040 695 aaKnown RBP12.13□□□□□ -0.47
LRRC28-204ENST00000558172 SCRN1Q12765 414 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 NTRK3Q16288 839 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 QRICH1Q2TAL8 776 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 SNRNP48Q6IEG0 339 aaKnown RBP12.13□□□□□ -0.47
LRRC28-204ENST00000558172 CCDC174Q6PII3 467 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 NOL8Q76FK4 1167 aaKnown RBP12.13□□□□□ -0.47
LRRC28-204ENST00000558172 NBPF11Q86T75 865 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 FBXO11Q86XK2 927 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 CHST13Q8NET6 341 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 ZNF296Q8WUU4 475 aaPredicted RBP12.13□□□□□ -0.47
LRRC28-204ENST00000558172 GTF3C6Q969F1 213 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 PIGSQ96S52 555 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 AMNQ9BXJ7 453 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 MOV10L1Q9BXT6 1211 aaKnown RBP12.13□□□□□ -0.47
LRRC28-204ENST00000558172 MAF1Q9H063 256 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 RAVER2Q9HCJ3 691 aaKnown RBP12.13□□□□□ -0.47
LRRC28-204ENST00000558172 FBXO40Q9UH90 709 aa12.13□□□□□ -0.47
LRRC28-204ENST00000558172 FOXN1O15353 648 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 PRPF3O43395 683 aaKnown RBP12.12□□□□□ -0.47
LRRC28-204ENST00000558172 STRNO43815 780 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 GNRH1P01148 92 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 HSPA8P11142 646 aaKnown RBP12.12□□□□□ -0.47
LRRC28-204ENST00000558172 FCGRTP55899 365 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 SNAP25P60880 206 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 FUT2Q10981 343 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 SLC35G1Q2M3R5 365 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 HOMER1Q86YM7 354 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 POTEDQ86YR6 584 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 TRIM22Q8IYM9 498 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 CMTR1Q8N1G2 835 aaKnown RBP12.12□□□□□ -0.47
LRRC28-204ENST00000558172 CCDC82Q8N4S0 544 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 RNF26Q9BY78 433 aaPredicted RBP12.12□□□□□ -0.47
LRRC28-204ENST00000558172 NCOA5Q9HCD5 579 aaKnown RBP12.12□□□□□ -0.47
LRRC28-204ENST00000558172 CWC22Q9HCG8 908 aaKnown RBP12.12□□□□□ -0.47
LRRC28-204ENST00000558172 TSKSQ9UJT2 592 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 CCPG1Q9ULG6 757 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 V9GY48 417 aaPredicted RBP12.12□□□□□ -0.47
LRRC28-204ENST00000558172 RBBP6Q7Z6E9 1792 aaKnown RBP12.12□□□□□ -0.47
LRRC28-204ENST00000558172 PLXNA1Q9UIW2 1896 aa12.12□□□□□ -0.47
LRRC28-204ENST00000558172 ABCB11O95342 1321 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 CNTNAP5Q8WYK1 1306 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 hCG_1984214I3L0E3 225 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 PEX10O60683 326 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 LARGE1O95461 756 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 ALAS1P13196 640 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 ERCC3P19447 782 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 HOXD10P28358 340 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 SLC4A3P48751 1232 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 SSRP1Q08945 709 aaKnown RBP12.11□□□□□ -0.47
LRRC28-204ENST00000558172 PLEKHH3Q7Z736 793 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 NCAPG2Q86XI2 1143 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 ZNF713Q8N859 430 aaPredicted RBP12.11□□□□□ -0.47
LRRC28-204ENST00000558172 SNX21Q969T3 373 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 COA7Q96BR5 231 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 AGBL1Q96MI9 1066 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 TRERF1Q96PN7 1200 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 LLPHQ9BRT6 129 aaKnown RBP12.11□□□□□ -0.47
LRRC28-204ENST00000558172 PORCNQ9H237 461 aa12.11□□□□□ -0.47
LRRC28-204ENST00000558172 MRPL11Q9Y3B7 192 aaKnown RBP12.11□□□□□ -0.47
LRRC28-204ENST00000558172 TNPO2O14787 897 aaKnown RBP12.1□□□□□ -0.47
LRRC28-204ENST00000558172 FMNL1O95466 1100 aaPredicted RBP12.1□□□□□ -0.47
LRRC28-204ENST00000558172 PSMC4P43686 418 aa12.1□□□□□ -0.47
LRRC28-204ENST00000558172 PFKFB3Q16875 520 aaPredicted RBP12.1□□□□□ -0.47
LRRC28-204ENST00000558172 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms