RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 MEI1Q5TIA1 1274 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 RASIP1Q5U651 963 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 FBXO33Q7Z6M2 555 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 ZNF605Q86T29 641 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 MCATQ8IVS2 390 aaKnown RBP3.6□□□□□ -1.83
SLIRP-208ENST00000556956 MRPL41Q8IXM3 137 aaKnown RBP3.6□□□□□ -1.83
SLIRP-208ENST00000556956 MFSD4AQ8N468 514 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 PIWIL2Q8TC59 973 aaKnown RBP3.6□□□□□ -1.83
SLIRP-208ENST00000556956 GAL3ST3Q96A11 431 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 TMEM74Q96NL1 305 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 PANK3Q9H999 370 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 CHMP5Q9NZZ3 219 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 POGKQ9P215 609 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 CFDP1Q9UEE9 299 aaPredicted RBP3.6□□□□□ -1.83
SLIRP-208ENST00000556956 PCDHB5Q9Y5E4 795 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 CGNL1Q0VF96 1302 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 ZMYM3Q14202 1370 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 ROBO2Q9HCK4 1378 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 NINLQ9Y2I6 1382 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 PZPP20742 1482 aa3.6□□□□□ -1.83
SLIRP-208ENST00000556956 EPRSP07814 1512 aaKnown RBP3.6□□□□□ -1.83
SLIRP-208ENST00000556956 E9PSI1 815 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 SLITRK5O94991 958 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 TSPY4P0CV99 314 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 TSPY10P0CW01 314 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 XRCC6P12956 609 aaKnown RBP eCLIP3.59□□□□□ -1.83
SLIRP-208ENST00000556956 TFE3P19532 575 aaPredicted RBP3.59□□□□□ -1.83
SLIRP-208ENST00000556956 MCM4P33991 863 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 ACVRL1P37023 503 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 CAMK2GQ13555 558 aaPredicted RBP3.59□□□□□ -1.83
SLIRP-208ENST00000556956 SEPT6Q14141 434 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 C20orf194Q5TEA3 1177 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 PRAMEF13Q5VWM6 474 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.59□□□□□ -1.83
SLIRP-208ENST00000556956 THAP5Q7Z6K1 395 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 SP8Q8IXZ3 490 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 TRMT2AQ8IZ69 625 aaKnown RBP3.59□□□□□ -1.83
SLIRP-208ENST00000556956 PHC3Q8NDX5 983 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 GATAD2BQ8WXI9 593 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 SYTL4Q96C24 671 aaPredicted RBP3.59□□□□□ -1.83
SLIRP-208ENST00000556956 TRIM44Q96DX7 344 aaPredicted RBP3.59□□□□□ -1.83
SLIRP-208ENST00000556956 TMEM87BQ96K49 555 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 MAP7D2Q96T17 732 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 BCL2L13Q9BXK5 485 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 PDCL3Q9H2J4 239 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 TRIT1Q9H3H1 467 aaKnown RBP3.59□□□□□ -1.83
SLIRP-208ENST00000556956 MYH16Q9H6N6 1097 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 ANTXR1Q9H6X2 564 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 ATP13A1Q9HD20 1204 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 KCNH3Q9ULD8 1083 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 CEP131Q9UPN4 1083 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 KNSTRNQ9Y448 316 aa3.59□□□□□ -1.83
SLIRP-208ENST00000556956 GAPVD1Q14C86 1478 aa3.59□□□□□ -1.84
SLIRP-208ENST00000556956 ARHGEF12Q9NZN5 1544 aa3.59□□□□□ -1.84
SLIRP-208ENST00000556956 IQGAP2Q13576 1575 aa3.59□□□□□ -1.84
SLIRP-208ENST00000556956 KDM6BO15054 1643 aa3.59□□□□□ -1.84
SLIRP-208ENST00000556956 CYR61O00622 381 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 CILPO75339 1184 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 CBX7O95931 251 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 PLCG1P19174 1290 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 CANXP27824 592 aaKnown RBP3.58□□□□□ -1.84
SLIRP-208ENST00000556956 PPP2R1AP30153 589 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 TERF1P54274 439 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 NKG7Q16617 165 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 CDKAL1Q5VV42 579 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 TMPRSS7Q7RTY8 843 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 SKAP1Q86WV1 359 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 ANP32BQ92688 251 aaKnown RBP3.58□□□□□ -1.84
SLIRP-208ENST00000556956 FAM161BQ96MY7 647 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 RNF32Q9H0A6 362 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 SLKQ9H2G2 1235 aaPredicted RBP3.58□□□□□ -1.84
SLIRP-208ENST00000556956 RWDD1Q9H446 243 aaPredicted RBP3.58□□□□□ -1.84
SLIRP-208ENST00000556956 FBRSQ9HAH7 460 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 GRPEL1Q9HAV7 217 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 TLR6Q9Y2C9 796 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 USP19O94966 1318 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 ZNF521Q96K83 1311 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 ZNF644Q9H582 1327 aaPredicted RBP3.58□□□□□ -1.84
SLIRP-208ENST00000556956 CENPJQ9HC77 1338 aaPredicted RBP3.58□□□□□ -1.84
SLIRP-208ENST00000556956 NUP155O75694 1391 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 TDRD9Q8NDG6 1382 aaKnown RBP3.58□□□□□ -1.84
SLIRP-208ENST00000556956 CCDC144AA2RUR9 1427 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 ADGRL2O95490 1459 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 MAGI1Q96QZ7 1491 aaPredicted RBP3.58□□□□□ -1.84
SLIRP-208ENST00000556956 MAGI3Q5TCQ9 1506 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 KDM5CP41229 1560 aa3.58□□□□□ -1.84
SLIRP-208ENST00000556956 TEX51A0A1B0GUA7 166 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 KIAA0556O60303 1618 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 PEX10O60683 326 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 IGHDP01880 384 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 PF4P02776 101 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 CTSHP09668 335 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 TACR2P21452 398 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 TRHRP34981 398 aaPredicted RBP3.57□□□□□ -1.84
SLIRP-208ENST00000556956 TNNI2P48788 182 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 KRTAP10-7P60409 375 aaPredicted RBP3.57□□□□□ -1.84
SLIRP-208ENST00000556956 MPP2Q14168 576 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 KIF14Q15058 1648 aa3.57□□□□□ -1.84
SLIRP-208ENST00000556956 CWF19L2Q2TBE0 894 aaKnown RBP3.57□□□□□ -1.84
SLIRP-208ENST00000556956 TMEM201Q5SNT2 666 aa3.57□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms