RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 ALDH1A1P00352 501 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 MAP2K2P36507 400 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 ST3GAL1Q11201 340 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 NBPF11Q86T75 865 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 HOMER1Q86YM7 354 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 FAM184AQ8NB25 1140 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 NSUN7Q8NE18 718 aaKnown RBP11.26□□□□□ -0.61
TMEM260-213ENST00000556929 SMARCC2Q8TAQ2 1214 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 WASF1Q92558 559 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 PHKBQ93100 1093 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 PIGSQ96S52 555 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 PARK7Q99497 189 aaKnown RBP11.26□□□□□ -0.61
TMEM260-213ENST00000556929 ASCC2Q9H1I8 757 aaPredicted RBP11.26□□□□□ -0.61
TMEM260-213ENST00000556929 CPVLQ9H3G5 476 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 JMJD4Q9H9V9 463 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 FBXO28Q9NVF7 368 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 PNMA2Q9UL42 364 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 THSD7BQ9C0I4 1608 aa11.26□□□□□ -0.61
TMEM260-213ENST00000556929 BAZ2BQ9UIF8 2168 aaKnown RBP11.26□□□□□ -0.61
TMEM260-213ENST00000556929 PNMA6FA0A0J9YX94 578 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 PTPDC1A2A3K4 754 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 hCG_1984214I3L0E3 225 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 ZBTB5O15062 677 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 GALR2O43603 387 aaPredicted RBP11.25□□□□□ -0.61
TMEM260-213ENST00000556929 CYTH3O43739 400 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 AOC2O75106 756 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 CTDNEP1O95476 244 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 VEGFBP49765 207 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 HERVK_113P62684 666 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 HTRA3P83110 453 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 FUT2Q10981 343 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 CDC37Q16543 378 aaPredicted RBP11.25□□□□□ -0.61
TMEM260-213ENST00000556929 LBX2Q6XYB7 198 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 IFNL1Q8IU54 200 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 FAM43AQ8N2R8 423 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 ZNF713Q8N859 430 aaPredicted RBP11.25□□□□□ -0.61
TMEM260-213ENST00000556929 MB21D1Q8N884 522 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 SMCR8Q8TEV9 937 aaPredicted RBP11.25□□□□□ -0.61
TMEM260-213ENST00000556929 ATG4CQ96DT6 458 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 MTMR8Q96EF0 704 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 P2RX7Q99572 595 aaKnown RBP11.25□□□□□ -0.61
TMEM260-213ENST00000556929 PTPN18Q99952 460 aa11.25□□□□□ -0.61
TMEM260-213ENST00000556929 RANBP17Q9H2T7 1088 aaKnown RBP11.25□□□□□ -0.61
TMEM260-213ENST00000556929 ORC3Q9UBD5 711 aaPredicted RBP11.25□□□□□ -0.61
TMEM260-213ENST00000556929 V9GY48 417 aaPredicted RBP11.25□□□□□ -0.61
TMEM260-213ENST00000556929 RBBP6Q7Z6E9 1792 aaKnown RBP11.24□□□□□ -0.61
TMEM260-213ENST00000556929 SPDYE16A6NNV3 312 aaPredicted RBP11.24□□□□□ -0.61
TMEM260-213ENST00000556929 IGF2BP3O00425 579 aaKnown RBP eCLIP11.24□□□□□ -0.61
TMEM260-213ENST00000556929 VWA5AO00534 786 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 XBP1P17861 261 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 GJB2P29033 226 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 GCLCP48506 637 aaPredicted RBP11.24□□□□□ -0.61
TMEM260-213ENST00000556929 OAZ1P54368 228 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 TAF1CQ15572 869 aaPredicted RBP11.24□□□□□ -0.61
TMEM260-213ENST00000556929 PFKFB3Q16875 520 aaPredicted RBP11.24□□□□□ -0.61
TMEM260-213ENST00000556929 QRICH1Q2TAL8 776 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 PIBF1Q8WXW3 757 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 DDX11Q96FC9 970 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 AMNQ9BXJ7 453 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 TSPYL2Q9H2G4 693 aaPredicted RBP11.24□□□□□ -0.61
TMEM260-213ENST00000556929 SLC38A10Q9HBR0 1119 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 ZFYVE28Q9HCC9 887 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 ADAMTS5Q9UNA0 930 aa11.24□□□□□ -0.61
TMEM260-213ENST00000556929 JAK2O60674 1132 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 PPFIA3O75145 1194 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 ICAM1P05362 532 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 CYP2C8P10632 490 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 SCG2P13521 617 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 SLC35G1Q2M3R5 365 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 CCDC174Q6PII3 467 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 FBXO11Q86XK2 927 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 SPRYD3Q8NCJ5 442 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 CCDC12Q8WUD4 166 aaPredicted RBP11.23□□□□□ -0.61
TMEM260-213ENST00000556929 ZIC5Q96T25 663 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 PAGR1Q9BTK6 254 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 RABGAP1Q9Y3P9 1069 aa11.23□□□□□ -0.61
TMEM260-213ENST00000556929 hCG_1642624A0A1W2PR95 340 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 ATP2A1O14983 1001 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 ABCB11O95342 1321 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 FDPSP14324 419 aaKnown RBP11.22□□□□□ -0.61
TMEM260-213ENST00000556929 PDCP20941 246 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 SNAP25P60880 206 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 TRIM29Q14134 588 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 PLS1Q14651 629 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 CPXCR1Q8N123 301 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 CCDC148Q8NFR7 591 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 IPO9Q96P70 1041 aaKnown RBP11.22□□□□□ -0.61
TMEM260-213ENST00000556929 ALG1Q9BT22 464 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 CWC22Q9HCG8 908 aaKnown RBP11.22□□□□□ -0.61
TMEM260-213ENST00000556929 RAVER2Q9HCJ3 691 aaKnown RBP11.22□□□□□ -0.61
TMEM260-213ENST00000556929 SH3GLB2Q9NR46 395 aa11.22□□□□□ -0.61
TMEM260-213ENST00000556929 ZNF536O15090 1300 aa11.21□□□□□ -0.61
TMEM260-213ENST00000556929 CA12O43570 354 aa11.21□□□□□ -0.61
TMEM260-213ENST00000556929 PDIA4P13667 645 aaKnown RBP11.21□□□□□ -0.61
TMEM260-213ENST00000556929 COPB2P35606 906 aa11.21□□□□□ -0.61
TMEM260-213ENST00000556929 STAT3P40763 770 aa11.21□□□□□ -0.61
TMEM260-213ENST00000556929 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
TMEM260-213ENST00000556929 NAPAP54920 295 aa11.21□□□□□ -0.61
TMEM260-213ENST00000556929 CCNA1P78396 465 aa11.21□□□□□ -0.61
TMEM260-213ENST00000556929 TMEM132BQ14DG7 1078 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms