RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 TEPSINQ96N21 525 aa6.8□□□□□ -1.32
PRPF39-210ENST00000556718 CDADC1Q9BWV3 514 aa6.8□□□□□ -1.32
PRPF39-210ENST00000556718 LRRC3Q9BY71 257 aa6.8□□□□□ -1.32
PRPF39-210ENST00000556718 CNNM2Q9H8M5 875 aa6.8□□□□□ -1.32
PRPF39-210ENST00000556718 GFOD1Q9NXC2 390 aa6.8□□□□□ -1.32
PRPF39-210ENST00000556718 IMPACTQ9P2X3 320 aa6.8□□□□□ -1.32
PRPF39-210ENST00000556718 FFAR3O14843 346 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 SORBS3O60504 671 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 IGSF3O75054 1194 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 ZNF205O95201 554 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 ATE1O95260 518 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 ADRB1P08588 477 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 CRKP46108 304 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 CWF19L2Q2TBE0 894 aaKnown RBP6.79□□□□□ -1.32
PRPF39-210ENST00000556718 RPTNQ6XPR3 784 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 TMEM192Q8IY95 271 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 TMEM52Q8NDY8 209 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 JMJD8Q96S16 334 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 AP5S1Q9NUS5 200 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 VTI1BQ9UEU0 232 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 ACSL6Q9UKU0 697 aa6.79□□□□□ -1.32
PRPF39-210ENST00000556718 ZC3H12DA2A288 527 aaKnown RBP6.78□□□□□ -1.32
PRPF39-210ENST00000556718 PRICKLE3O43900 615 aaPredicted RBP6.78□□□□□ -1.32
PRPF39-210ENST00000556718 CLEC3AO75596 197 aa6.78□□□□□ -1.32
PRPF39-210ENST00000556718 LIMS1P48059 325 aa6.78□□□□□ -1.32
PRPF39-210ENST00000556718 CBX2Q14781 532 aaPredicted RBP6.78□□□□□ -1.32
PRPF39-210ENST00000556718 CRTC3Q6UUV7 619 aa6.78□□□□□ -1.32
PRPF39-210ENST00000556718 ERMP1Q7Z2K6 904 aa6.78□□□□□ -1.32
PRPF39-210ENST00000556718 ANTXR1Q9H6X2 564 aa6.78□□□□□ -1.32
PRPF39-210ENST00000556718 KCNQ5Q9NR82 932 aa6.78□□□□□ -1.32
PRPF39-210ENST00000556718 PLA2G2DQ9UNK4 145 aa6.78□□□□□ -1.32
PRPF39-210ENST00000556718 SCAMP3O14828 347 aaKnown RBP6.77□□□□□ -1.33
PRPF39-210ENST00000556718 GREM1O60565 184 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 RECKO95980 971 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 MSL3P1P0C860 447 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 IGFBP6P24592 240 aaPredicted RBP6.77□□□□□ -1.33
PRPF39-210ENST00000556718 BMP8BP34820 402 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 CLCQ05315 142 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 RAD51AP2Q09MP3 1159 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 PLEKHN1Q494U1 663 aaPredicted RBP6.77□□□□□ -1.33
PRPF39-210ENST00000556718 FRMD5Q7Z6J6 570 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 BDH2Q9BUT1 245 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 HCFC2Q9Y5Z7 792 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 SHROOM4Q9ULL8 1493 aa6.77□□□□□ -1.33
PRPF39-210ENST00000556718 IRS2Q9Y4H2 1338 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 A0A1W2PQ45 241 aaPredicted RBP6.76□□□□□ -1.33
PRPF39-210ENST00000556718 A0A1W2PQY0 241 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 VAV1P15498 845 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 SLURP1P55000 103 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 ZNF200P98182 395 aaPredicted RBP6.76□□□□□ -1.33
PRPF39-210ENST00000556718 MVKQ03426 396 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 TMEM62Q0P6H9 643 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 EFEMP1Q12805 493 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 RTP5Q14D33 572 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 RTP2Q5QGT7 225 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 NLRC3Q7RTR2 1065 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 ADGRG2Q8IZP9 1017 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 C8orf37Q96NL8 207 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 MKRN2Q9H000 416 aaKnown RBP6.76□□□□□ -1.33
PRPF39-210ENST00000556718 EHMT1Q9H9B1 1298 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 FBXL21Q9UKT6 434 aa6.76□□□□□ -1.33
PRPF39-210ENST00000556718 ROBO2Q9HCK4 1378 aa6.75□□□□□ -1.33
PRPF39-210ENST00000556718 EIF4A3P38919 411 aaKnown RBP6.75□□□□□ -1.33
PRPF39-210ENST00000556718 ZC3H6P61129 1189 aaKnown RBP6.75□□□□□ -1.33
PRPF39-210ENST00000556718 PLP2Q04941 152 aa6.75□□□□□ -1.33
PRPF39-210ENST00000556718 MRPL58Q14197 206 aaKnown RBP6.75□□□□□ -1.33
PRPF39-210ENST00000556718 ERICH6BQ5W0A0 696 aa6.75□□□□□ -1.33
PRPF39-210ENST00000556718 GK5Q6ZS86 529 aa6.75□□□□□ -1.33
PRPF39-210ENST00000556718 SLC6A18Q96N87 628 aa6.75□□□□□ -1.33
PRPF39-210ENST00000556718 BACH2Q9BYV9 841 aa6.75□□□□□ -1.33
PRPF39-210ENST00000556718 SUPT16HQ9Y5B9 1047 aaKnown RBP6.75□□□□□ -1.33
PRPF39-210ENST00000556718 A0A1B0GTL3 188 aa6.74□□□□□ -1.33
PRPF39-210ENST00000556718 NME1P15531 152 aaKnown RBP6.74□□□□□ -1.33
PRPF39-210ENST00000556718 AUHQ13825 339 aaKnown RBP6.74□□□□□ -1.33
PRPF39-210ENST00000556718 TMEM87AQ8NBN3 555 aa6.74□□□□□ -1.33
PRPF39-210ENST00000556718 ZNF296Q8WUU4 475 aaPredicted RBP6.74□□□□□ -1.33
PRPF39-210ENST00000556718 UBP1Q9NZI7 540 aa6.74□□□□□ -1.33
PRPF39-210ENST00000556718 PCDHB12Q9Y5F1 795 aa6.74□□□□□ -1.33
PRPF39-210ENST00000556718 PLA2G1BP04054 148 aaKnown RBP6.73□□□□□ -1.33
PRPF39-210ENST00000556718 ERCC5P28715 1186 aaPredicted RBP6.73□□□□□ -1.33
PRPF39-210ENST00000556718 CCNFP41002 786 aa6.73□□□□□ -1.33
PRPF39-210ENST00000556718 KCNC1P48547 511 aa6.73□□□□□ -1.33
PRPF39-210ENST00000556718 MAPKAPK2P49137 400 aa6.73□□□□□ -1.33
PRPF39-210ENST00000556718 VWA3BQ502W6 1294 aa6.73□□□□□ -1.33
PRPF39-210ENST00000556718 SEZ6Q53EL9 994 aa6.73□□□□□ -1.33
PRPF39-210ENST00000556718 ZC3H14Q6PJT7 736 aaKnown RBP6.73□□□□□ -1.33
PRPF39-210ENST00000556718 LSRQ86X29 649 aaPredicted RBP6.73□□□□□ -1.33
PRPF39-210ENST00000556718 ADAMTS1Q9UHI8 967 aa6.73□□□□□ -1.33
PRPF39-210ENST00000556718 FAM86C2PA6NEL3 165 aa6.72□□□□□ -1.33
PRPF39-210ENST00000556718 TNFRSF10CO14798 259 aa6.72□□□□□ -1.33
PRPF39-210ENST00000556718 ENDOUP21128 410 aaKnown RBP6.72□□□□□ -1.33
PRPF39-210ENST00000556718 FBLN1P23142 703 aa6.72□□□□□ -1.33
PRPF39-210ENST00000556718 SPATS1Q496A3 300 aa6.72□□□□□ -1.33
PRPF39-210ENST00000556718 SLC9A7Q96T83 725 aa6.72□□□□□ -1.33
PRPF39-210ENST00000556718 SLC12A9Q9BXP2 914 aa6.72□□□□□ -1.33
PRPF39-210ENST00000556718 TMPRSS5Q9H3S3 457 aa6.72□□□□□ -1.33
PRPF39-210ENST00000556718 C9IYK1 514 aa6.71□□□□□ -1.34
PRPF39-210ENST00000556718 SHOXO15266 292 aa6.71□□□□□ -1.34
PRPF39-210ENST00000556718 GSTM1P09488 218 aa6.71□□□□□ -1.34
PRPF39-210ENST00000556718 ATF2P15336 505 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms