RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 A0A0G2JMZ2 1700 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 IGHA2P01877 340 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 ERCC3P19447 782 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 PLA2G5P39877 138 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 PSEN2P49810 448 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 FPGSQ05932 587 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 CEP85Q6P2H3 762 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 ERC1Q8IUD2 1116 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 TIFAQ96CG3 184 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 FAM122AQ96E09 287 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 TANGO6Q9C0B7 1094 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 TLR7Q9NYK1 1049 aaKnown RBP12.14□□□□□ -0.47
SCFD1-220ENST00000556486 MTMR7Q9Y216 660 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 GBF1Q92538 1859 aa12.14□□□□□ -0.47
SCFD1-220ENST00000556486 COL11A1P12107 1806 aaPredicted RBP12.14□□□□□ -0.47
SCFD1-220ENST00000556486 TAL1P17542 331 aaPredicted RBP12.13□□□□□ -0.47
SCFD1-220ENST00000556486 CYP7A1P22680 504 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 IGFBP4P22692 258 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 USP5P45974 858 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 SEPT2Q15019 361 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 ABCB5Q2M3G0 1257 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 CERKLQ49MI3 558 aaPredicted RBP12.13□□□□□ -0.47
SCFD1-220ENST00000556486 DMRTA1Q5VZB9 504 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 CCDC129Q6ZRS4 1044 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 NCAPG2Q86XI2 1143 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 CLEC10AQ8IUN9 316 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 ITPRIPQ8IWB1 547 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 SPATC1LQ9H0A9 340 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 XPNPEP3Q9NQH7 507 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 TMEM39AQ9NV64 488 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 TACC3Q9Y6A5 838 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 BDP1A6H8Y1 2624 aa12.13□□□□□ -0.47
SCFD1-220ENST00000556486 CHD7Q9P2D1 2997 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 A0A1W2PQ45 241 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 A0A1W2PQY0 241 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 PATL2C9JE40 543 aaKnown RBP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 MPHOSPH10O00566 681 aaKnown RBP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 IDH1O75874 414 aaKnown RBP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 PGK2P07205 417 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 ACRP10323 421 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 GUCY1A2P33402 732 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 USP14P54578 494 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 MAP3K12Q12852 859 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 KIAA1755Q5JYT7 1200 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 OLFML2BQ68BL8 750 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 LBX2Q6XYB7 198 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 NUDT18Q6ZVK8 323 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 MICALL1Q8N3F8 863 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 ASB2Q96Q27 587 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 UHRF1Q96T88 793 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 GAS2L1Q99501 681 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 RIOK1Q9BRS2 568 aaKnown RBP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 KIAA1683Q9H0B3 1180 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 CCDC8Q9H0W5 538 aaPredicted RBP12.12□□□□□ -0.47
SCFD1-220ENST00000556486 THEGQ9P2T0 379 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 SERPINB13Q9UIV8 391 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 PHF24Q9UPV7 400 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 NAV1Q8NEY1 1877 aa12.12□□□□□ -0.47
SCFD1-220ENST00000556486 ZBED9Q6R2W3 1325 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-220ENST00000556486 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.11□□□□□ -0.47
SCFD1-220ENST00000556486 A0A1W2PRG0 241 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 SHMT1P34896 483 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 HNRNPUQ00839 825 aaKnown RBP eCLIP12.11□□□□□ -0.47
SCFD1-220ENST00000556486 ADGRE1Q14246 886 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 HSP90AB4PQ58FF6 505 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 TTC6Q86TZ1 520 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 SPICE1Q8N0Z3 855 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 MAGEB6Q8N7X4 407 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 MAML3Q96JK9 1138 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 PBX4Q9BYU1 374 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 TMEM134Q9H6X4 195 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 MYO9BQ13459 2157 aa12.11□□□□□ -0.47
SCFD1-220ENST00000556486 PARP14Q460N5 1801 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 KIAA0355O15063 1070 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 RARBP10826 455 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 RFX1P22670 979 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 PLCD1P51178 756 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 GABPAQ06546 454 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 FAAP100Q0VG06 881 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 C16orf59Q7L2K0 433 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.1□□□□□ -0.47
SCFD1-220ENST00000556486 ATG4CQ96DT6 458 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 ANTXR1Q9H6X2 564 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 CABP5Q9NP86 173 aa12.1□□□□□ -0.47
SCFD1-220ENST00000556486 C3orf80F5H4A9 247 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 TK2O00142 265 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 STRNO43815 780 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 KDM4AO75164 1064 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 TFF2Q03403 129 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 COG2Q14746 738 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 TTF1Q15361 905 aaPredicted RBP12.09□□□□□ -0.47
SCFD1-220ENST00000556486 C1orf53Q5VUE5 145 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 AACSQ86V21 672 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 SLC44A5Q8NCS7 719 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 ATXN2LQ8WWM7 1075 aaKnown RBP12.09□□□□□ -0.47
SCFD1-220ENST00000556486 KCNK17Q96T54 332 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 PPP1R12CQ9BZL4 782 aa12.09□□□□□ -0.47
SCFD1-220ENST00000556486 NKX2-4Q9H2Z4 354 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms