RNA–Protein interactions for RNA: ENST00000556445.1

SRP54-211, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 530 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-211ENST00000556445 MAGI2Q86UL8 1455 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 TEX14Q8IWB6 1497 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 NEO1Q92859 1461 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 EIF2AK4Q9P2K8 1649 aaKnown RBP6.81□□□□□ -1.32
SRP54-211ENST00000556445 RAB11FIP3O75154 756 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 RAG1P15918 1043 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 TPP2P29144 1249 aaPredicted RBP6.81□□□□□ -1.32
SRP54-211ENST00000556445 GBP1P32455 592 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 MCM4P33991 863 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 TXKP42681 527 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 TSPYL5Q86VY4 417 aaPredicted RBP6.81□□□□□ -1.32
SRP54-211ENST00000556445 TMEM40Q8WWA1 233 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 TRIT1Q9H3H1 467 aaKnown RBP6.81□□□□□ -1.32
SRP54-211ENST00000556445 SCAPERQ9BY12 1400 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 TRAPPC8Q9Y2L5 1435 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 ATP7AQ04656 1500 aa6.81□□□□□ -1.32
SRP54-211ENST00000556445 SHISA3A0PJX4 238 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 ERCC5P28715 1186 aaPredicted RBP6.8□□□□□ -1.32
SRP54-211ENST00000556445 NLRC3Q7RTR2 1065 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 KRTAP19-1Q8IUB9 90 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 CREG2Q8IUH2 290 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 FAM168AQ92567 244 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 GPATCH2Q9NW75 528 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 INO80Q9ULG1 1556 aaPredicted RBP6.8□□□□□ -1.32
SRP54-211ENST00000556445 SUGT1Q9Y2Z0 365 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 ZFYVE16Q7Z3T8 1539 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 SBNO2Q9Y2G9 1366 aa6.8□□□□□ -1.32
SRP54-211ENST00000556445 ATP10AO60312 1499 aa6.79□□□□□ -1.32
SRP54-211ENST00000556445 CCDC144AA2RUR9 1427 aa6.79□□□□□ -1.32
SRP54-211ENST00000556445 NME1P15531 152 aaKnown RBP6.79□□□□□ -1.32
SRP54-211ENST00000556445 GDNFP39905 211 aa6.79□□□□□ -1.32
SRP54-211ENST00000556445 LRRFIP1Q32MZ4 808 aaKnown RBP6.79□□□□□ -1.32
SRP54-211ENST00000556445 ALPK1Q96QP1 1244 aa6.79□□□□□ -1.32
SRP54-211ENST00000556445 LNPKQ9C0E8 428 aa6.79□□□□□ -1.32
SRP54-211ENST00000556445 SLAMF8Q9P0V8 285 aa6.79□□□□□ -1.32
SRP54-211ENST00000556445 ZNRF3Q9ULT6 936 aa6.79□□□□□ -1.32
SRP54-211ENST00000556445 TMA7Q9Y2S6 64 aaKnown RBP6.79□□□□□ -1.32
SRP54-211ENST00000556445 DHX29Q7Z478 1369 aaKnown RBP6.79□□□□□ -1.32
SRP54-211ENST00000556445 GLI2P10070 1586 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 UHRF1BP1Q6BDS2 1440 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 DNAJC25-GNG10A0A024R161 153 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 TLDC2A0PJX2 215 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 TNFRSF10CO14798 259 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 RNF4P78317 190 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 HDLBPQ00341 1268 aaKnown RBP6.78□□□□□ -1.32
SRP54-211ENST00000556445 RALGPS1Q5JS13 557 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 NBPF12Q5TAG4 269 aaPredicted RBP6.78□□□□□ -1.32
SRP54-211ENST00000556445 FYB2Q5VWT5 728 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 OGFOD2Q6N063 350 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.78□□□□□ -1.32
SRP54-211ENST00000556445 MYH16Q9H6N6 1097 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 SLC52A1Q9NWF4 448 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 DUSP13Q9UII6 198 aa6.78□□□□□ -1.32
SRP54-211ENST00000556445 DEPDC5O75140 1603 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 TPD52L2O43399 206 aaKnown RBP6.77□□□□□ -1.33
SRP54-211ENST00000556445 CCNFP41002 786 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 AFMP43652 599 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 ZSWIM9Q86XI8 627 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 ZNF654Q8IZM8 581 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 AFAP1Q8N556 730 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 GPATCH3Q96I76 525 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.77□□□□□ -1.33
SRP54-211ENST00000556445 PCDHA11Q9Y5I1 949 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 MLH3Q9UHC1 1453 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 KDM5CP41229 1560 aa6.77□□□□□ -1.33
SRP54-211ENST00000556445 POGZQ7Z3K3 1410 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 RIMBP3CA6NJZ7 1639 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 RIMBP3BA6NNM3 1639 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 RIMBP3Q9UFD9 1639 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.76□□□□□ -1.33
SRP54-211ENST00000556445 ANP32CO43423 234 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 HSPA5P11021 654 aaKnown RBP6.76□□□□□ -1.33
SRP54-211ENST00000556445 EGR3Q06889 387 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 NBPF9Q3BBW0 867 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 EGFLAMQ63HQ2 1017 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 TTC6Q86TZ1 520 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 TMEM192Q8IY95 271 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 EXOC8Q8IYI6 725 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 POU5F2Q8N7G0 328 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 CCDC120Q96HB5 630 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 SLC9A7Q96T83 725 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 DNAJC2Q99543 621 aaKnown RBP6.76□□□□□ -1.33
SRP54-211ENST00000556445 ADAMTS10Q9H324 1103 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 GOLGA2P5Q9HBQ8 144 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 METTL14Q9HCE5 456 aaKnown RBP6.76□□□□□ -1.33
SRP54-211ENST00000556445 TMEM59LQ9UK28 342 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 TET3O43151 1660 aa6.76□□□□□ -1.33
SRP54-211ENST00000556445 KIDINS220Q9ULH0 1771 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 HECW2Q9P2P5 1572 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 RALGAPBQ86X10 1494 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 ZNF503-AS2A6NEH8 195 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 ACRP10323 421 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 IMPDH2P12268 514 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 CHMP4BP1P59074 171 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 RAD51AP2Q09MP3 1159 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 PAK2Q13177 524 aa6.75□□□□□ -1.33
SRP54-211ENST00000556445 DDX10Q13206 875 aaKnown RBP6.75□□□□□ -1.33
SRP54-211ENST00000556445 NMIQ13287 307 aaPredicted RBP6.75□□□□□ -1.33
SRP54-211ENST00000556445 SNW1Q13573 536 aaKnown RBP6.75□□□□□ -1.33
SRP54-211ENST00000556445 KCNMB1Q16558 191 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms