RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 FAM86C2PA6NEL3 165 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 C9IYK1 514 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 FOXD2O60548 495 aaPredicted RBP6.66□□□□□ -1.34
SCFD1-219ENST00000556413 CYP4F8P98187 520 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 RTP2Q5QGT7 225 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 LDLRAD1Q5T700 205 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 INTS3Q68E01 1043 aaKnown RBP6.66□□□□□ -1.34
SCFD1-219ENST00000556413 TMC6Q7Z403 805 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 LDHDQ86WU2 507 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 IGDCC3Q8IVU1 814 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 NUP43Q8NFH3 380 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 SPON2Q9BUD6 331 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 XYLT2Q9H1B5 865 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 TNFRSF12AQ9NP84 129 aa6.66□□□□□ -1.34
SCFD1-219ENST00000556413 NUDT19A8MXV4 375 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 GSNP06396 782 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 CBX2Q14781 532 aaPredicted RBP6.65□□□□□ -1.34
SCFD1-219ENST00000556413 VMACQ2NL98 169 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 FAM129CQ86XR2 697 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 KIAA0825Q8IV33 1275 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 C7orf61Q8IZ16 206 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 DHRS1Q96LJ7 313 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 JMJD8Q96S16 334 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 IMPACTQ9P2X3 320 aa6.65□□□□□ -1.34
SCFD1-219ENST00000556413 TMEM62Q0P6H9 643 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 NFIXQ14938 502 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 CNKSR3Q6P9H4 555 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 CCDC144CPQ8IYA2 1237 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 DSCC1Q9BVC3 393 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 SLC12A9Q9BXP2 914 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 KRTAP4-5Q9BYR2 181 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 RTEL1Q9NZ71 1219 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 ZNRF3Q9ULT6 936 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 PCDHA5Q9Y5H7 936 aa6.64□□□□□ -1.35
SCFD1-219ENST00000556413 OTOL1A6NHN0 477 aaPredicted RBP6.63□□□□□ -1.35
SCFD1-219ENST00000556413 SASH1O94885 1247 aa6.63□□□□□ -1.35
SCFD1-219ENST00000556413 PMS1P54277 932 aaKnown RBP6.63□□□□□ -1.35
SCFD1-219ENST00000556413 NCKAP1LP55160 1127 aa6.63□□□□□ -1.35
SCFD1-219ENST00000556413 RPTNQ6XPR3 784 aa6.63□□□□□ -1.35
SCFD1-219ENST00000556413 TMEM87AQ8NBN3 555 aa6.63□□□□□ -1.35
SCFD1-219ENST00000556413 GSTM1P09488 218 aa6.62□□□□□ -1.35
SCFD1-219ENST00000556413 MSL3P1P0C860 447 aa6.62□□□□□ -1.35
SCFD1-219ENST00000556413 MVKQ03426 396 aa6.62□□□□□ -1.35
SCFD1-219ENST00000556413 TDRD10Q5VZ19 366 aaKnown RBP6.62□□□□□ -1.35
SCFD1-219ENST00000556413 DCAF15Q66K64 600 aa6.62□□□□□ -1.35
SCFD1-219ENST00000556413 PPFIBP1Q86W92 1011 aa6.62□□□□□ -1.35
SCFD1-219ENST00000556413 FEZF2Q8TBJ5 459 aa6.62□□□□□ -1.35
SCFD1-219ENST00000556413 ADAMTS20P59510 1910 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 H0Y8X5 98 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 BUB1BO60566 1050 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-219ENST00000556413 IMPDH2P12268 514 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 SYN1P17600 705 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 ZNF445P59923 1031 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 ANKRD39Q53RE8 183 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 HLA-DQA1Q5Y7H0 255 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 CWF19L1Q69YN2 538 aaKnown RBP6.61□□□□□ -1.35
SCFD1-219ENST00000556413 TAB3Q8N5C8 712 aaPredicted RBP6.61□□□□□ -1.35
SCFD1-219ENST00000556413 NAT16Q8N8M0 369 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 CXorf38Q8TB03 319 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 PWWP2AQ96N64 755 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 SRRTQ9BXP5 876 aaKnown RBP6.61□□□□□ -1.35
SCFD1-219ENST00000556413 BCL11AQ9H165 835 aa6.61□□□□□ -1.35
SCFD1-219ENST00000556413 IRS2Q9Y4H2 1338 aa6.6□□□□□ -1.35
SCFD1-219ENST00000556413 MAPKAPK2P49137 400 aa6.6□□□□□ -1.35
SCFD1-219ENST00000556413 PLEKHN1Q494U1 663 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-219ENST00000556413 AXDND1Q5T1B0 1012 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-219ENST00000556413 SMARCC1Q92922 1105 aaPredicted RBP6.6□□□□□ -1.35
SCFD1-219ENST00000556413 BRF1Q92994 677 aa6.6□□□□□ -1.35
SCFD1-219ENST00000556413 TM9SF2Q99805 663 aa6.6□□□□□ -1.35
SCFD1-219ENST00000556413 GP6Q9HCN6 339 aa6.6□□□□□ -1.35
SCFD1-219ENST00000556413 A0A1W2PQ27 194 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 A0A1W2PQ64 194 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 A0A1W2PQC6 194 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 A0A1W2PQD8 194 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 FGF10O15520 208 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-219ENST00000556413 ZNF76P36508 570 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 NR1I3Q14994 352 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 ZYXQ15942 572 aaKnown RBP6.59□□□□□ -1.35
SCFD1-219ENST00000556413 NOL9Q5SY16 702 aaKnown RBP6.59□□□□□ -1.35
SCFD1-219ENST00000556413 ZC3H14Q6PJT7 736 aaKnown RBP6.59□□□□□ -1.35
SCFD1-219ENST00000556413 JAMLQ86YT9 394 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 ZDHHC14Q8IZN3 488 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 LINC01356Q8N9X3 169 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 TP53I13Q8NBR0 393 aaPredicted RBP6.59□□□□□ -1.35
SCFD1-219ENST00000556413 SYT8Q8NBV8 401 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 FERD3LQ96RJ6 166 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 FHOD1Q9Y613 1164 aa6.59□□□□□ -1.35
SCFD1-219ENST00000556413 TP53P04637 393 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-219ENST00000556413 DBHP09172 617 aa6.58□□□□□ -1.36
SCFD1-219ENST00000556413 CD247P20963 164 aa6.58□□□□□ -1.36
SCFD1-219ENST00000556413 IGFBP6P24592 240 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-219ENST00000556413 ZNF200P98182 395 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-219ENST00000556413 FANCCQ00597 558 aa6.58□□□□□ -1.36
SCFD1-219ENST00000556413 ZNF394Q53GI3 561 aa6.58□□□□□ -1.36
SCFD1-219ENST00000556413 CYP2R1Q6VVX0 501 aa6.58□□□□□ -1.36
SCFD1-219ENST00000556413 UNC5AQ6ZN44 842 aa6.58□□□□□ -1.36
SCFD1-219ENST00000556413 USP48Q86UV5 1035 aa6.58□□□□□ -1.36
SCFD1-219ENST00000556413 SP8Q8IXZ3 490 aa6.58□□□□□ -1.36
SCFD1-219ENST00000556413 RBBP8NLQ8NC74 664 aaPredicted RBP6.58□□□□□ -1.36
SCFD1-219ENST00000556413 FCRL3Q96P31 734 aaPredicted RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms