RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 NID2Q14112 1375 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 FDX1P10109 184 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 TAL1P17542 331 aaPredicted RBP16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 ERVK-9P63128 1117 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 ERVK-24P63145 666 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 FAM110CQ1W6H9 321 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 QRICH1Q2TAL8 776 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 Q3C1V9 767 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 USH1GQ495M9 461 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 SNRNP48Q6IEG0 339 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 AGBL1Q96MI9 1066 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 SPATC1LQ9H0A9 340 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 RIOX1Q9H6W3 641 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 CWC22Q9HCG8 908 aaKnown RBP16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 SH2B1Q9NRF2 756 aaPredicted RBP16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 HOMER2Q9NSB8 354 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 CCPG1Q9ULG6 757 aa16.28■□□□□ 0.2
VIPAS39-208ENST00000556412 PTPRFP10586 1907 aa16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 BCRP11274 1271 aa16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 STAT3P40763 770 aa16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 REPS2Q8NFH8 660 aa16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 TMX3Q96JJ7 454 aa16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 SLC26A6Q9BXS9 759 aa16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 TEX13BQ9BXU2 312 aa16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 ZNF214Q9UL59 606 aaPredicted RBP16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 V9GY48 417 aaPredicted RBP16.27■□□□□ 0.2
VIPAS39-208ENST00000556412 CNTNAP5Q8WYK1 1306 aa16.27■□□□□ 0.19
VIPAS39-208ENST00000556412 ZBTB5O15062 677 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 HSPA1AP0DMV8 641 aaKnown RBP16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 HSPA1BP0DMV9 641 aaKnown RBP16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 CCNA1P78396 465 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 AKAP17AQ02040 695 aaKnown RBP16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 NCAPG2Q86XI2 1143 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 HSCBQ8IWL3 235 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 CFHR5Q9BXR6 569 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 MORF4L1Q9UBU8 362 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 GPR25O00155 361 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 CDKL5O76039 1030 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 ICAM1P05362 532 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 ALAS1P13196 640 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 SMARCA1P28370 1054 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 FUT2Q10981 343 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 FBXO11Q86XK2 927 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 TRIM22Q8IYM9 498 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 MOV10L1Q9BXT6 1211 aaKnown RBP16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 ZNF536O15090 1300 aa16.26■□□□□ 0.19
VIPAS39-208ENST00000556412 PNMA6FA0A0J9YX94 578 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 IFNAR1P17181 557 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 OAZ1P54368 228 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 SP3Q02447 781 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 SSRP1Q08945 709 aaKnown RBP16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 ST3GAL1Q11201 340 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 NTRK3Q16288 839 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 HEATR3Q7Z4Q2 680 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 PORCNQ9H237 461 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 EFCC1Q9HA90 598 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 RIPK3Q9Y572 518 aa16.25■□□□□ 0.19
VIPAS39-208ENST00000556412 ERCC3P19447 782 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 MTMR8Q96EF0 704 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 DDX11Q96FC9 970 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 AMNQ9BXJ7 453 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 PCDHA1Q9Y5I3 950 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 PTPDC1A2A3K4 754 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 K7ELQ4 463 aaPredicted RBP16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 ATP2A1O14983 1001 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 FOXN1O15353 648 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 PPP1R11O60927 126 aaPredicted RBP16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 KIF22Q14807 665 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 RIOX2Q8IUF8 465 aa16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 ZNF296Q8WUU4 475 aaPredicted RBP16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 GPKOWQ92917 476 aaPredicted RBP eCLIP16.24■□□□□ 0.19
VIPAS39-208ENST00000556412 JAK2O60674 1132 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 FKTNO75072 461 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 FMNL1O95466 1100 aaPredicted RBP16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 CTDNEP1O95476 244 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 SLC25A27O95847 323 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 LACTBP83111 547 aaPredicted RBP16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 SNX21Q969T3 373 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 COA7Q96BR5 231 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 TRERF1Q96PN7 1200 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 RNF26Q9BY78 433 aaPredicted RBP16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 ARHGAP39Q9C0H5 1083 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 RNF146Q9NTX7 359 aa16.23■□□□□ 0.19
VIPAS39-208ENST00000556412 PRPF3O43395 683 aaKnown RBP16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 NSUN7Q8NE18 718 aaKnown RBP16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 CD99L2Q8TCZ2 262 aa16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 PNMA2Q9UL42 364 aa16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 TNPO2O14787 897 aaKnown RBP16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 MAPK4P31152 587 aa16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 PSMC4P43686 418 aa16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 MROH8Q9H579 483 aa16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 RBM27Q9P2N5 1060 aaKnown RBP16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 ORC3Q9UBD5 711 aaPredicted RBP16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 IVNS1ABPQ9Y6Y0 642 aa16.22■□□□□ 0.19
VIPAS39-208ENST00000556412 ABCB11O95342 1321 aa16.21■□□□□ 0.19
VIPAS39-208ENST00000556412 HSPA8P11142 646 aaKnown RBP16.21■□□□□ 0.19
VIPAS39-208ENST00000556412 SCG2P13521 617 aa16.21■□□□□ 0.19
VIPAS39-208ENST00000556412 COPB2P35606 906 aa16.21■□□□□ 0.19
VIPAS39-208ENST00000556412 FCGRTP55899 365 aa16.21■□□□□ 0.19
VIPAS39-208ENST00000556412 TRAF1Q13077 416 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms