RNA–Protein interactions for RNA: ENST00000556342.1

SYNE2-221, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 5

Gene SYNE2, Length 572 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-221ENST00000556342 MBD4O95243 580 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 PGK1P00558 417 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 PGK2P07205 417 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 CLTBP09497 229 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 IFIT2P09913 472 aaKnown RBP12.9□□□□□ -0.34
SYNE2-221ENST00000556342 TAL1P17542 331 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-221ENST00000556342 ADD2P35612 726 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 CDK8P49336 464 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 EPHB4P54760 987 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 KCTD2Q14681 263 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 ZNF792Q3KQV3 632 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 SLFNL1Q499Z3 407 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 C12orf60Q5U649 245 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 PACS2Q86VP3 889 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 KIF1BPQ96EK5 621 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 RNPC3Q96LT9 517 aaKnown RBP12.9□□□□□ -0.34
SYNE2-221ENST00000556342 TINF2Q9BSI4 451 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 NPDC1Q9NQX5 325 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-221ENST00000556342 FBXO28Q9NVF7 368 aa12.9□□□□□ -0.34
SYNE2-221ENST00000556342 DIS3Q9Y2L1 958 aaKnown RBP12.9□□□□□ -0.34
SYNE2-221ENST00000556342 TMEM265A0A087WTH1 108 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 A0A1W2PQ45 241 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-221ENST00000556342 A0A1W2PQY0 241 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 APBB1O00213 710 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 VWA5AO00534 786 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 PQBP1O60828 265 aaKnown RBP12.89□□□□□ -0.35
SYNE2-221ENST00000556342 EEF2P13639 858 aaKnown RBP12.89□□□□□ -0.35
SYNE2-221ENST00000556342 AKR1A1P14550 325 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 RAG1P15918 1043 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 COPB2P35606 906 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 STAT3P40763 770 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 C16orf86Q6ZW13 317 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 PANK1Q8TE04 598 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 WNT2BQ93097 391 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 KANSL2Q9H9L4 492 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 PAG1Q9NWQ8 432 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 ZNF214Q9UL59 606 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-221ENST00000556342 PPP1R9AQ9ULJ8 1098 aa12.89□□□□□ -0.35
SYNE2-221ENST00000556342 USP17L12C9JPN9 530 aa12.88□□□□□ -0.35
SYNE2-221ENST00000556342 USP17L21D6R901 530 aa12.88□□□□□ -0.35
SYNE2-221ENST00000556342 ZNF865P0CJ78 1059 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-221ENST00000556342 FOSL2P15408 326 aa12.88□□□□□ -0.35
SYNE2-221ENST00000556342 AMOTL1Q8IY63 956 aa12.88□□□□□ -0.35
SYNE2-221ENST00000556342 REPS2Q8NFH8 660 aa12.88□□□□□ -0.35
SYNE2-221ENST00000556342 LENG1Q96BZ8 264 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-221ENST00000556342 BOLA2Q9H3K6 86 aa12.88□□□□□ -0.35
SYNE2-221ENST00000556342 GOPCQ9HD26 462 aa12.88□□□□□ -0.35
SYNE2-221ENST00000556342 CNPY2Q9Y2B0 182 aa12.88□□□□□ -0.35
SYNE2-221ENST00000556342 ADAMTS4O75173 837 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 FPGSQ05932 587 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 FAM83BQ5T0W9 1011 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 THSD4Q6ZMP0 1018 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 ANKRD33Q7Z3H0 272 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 DDRGK1Q96HY6 314 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 TSEN34Q9BSV6 310 aaKnown RBP12.87□□□□□ -0.35
SYNE2-221ENST00000556342 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.87□□□□□ -0.35
SYNE2-221ENST00000556342 BCL11AQ9H165 835 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 TMEM39AQ9NV64 488 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 ZBED9Q6R2W3 1325 aa12.87□□□□□ -0.35
SYNE2-221ENST00000556342 PARP14Q460N5 1801 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 RAD21O60216 631 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 HMMRO75330 724 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 CHGBP05060 677 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 ATP5JP18859 108 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 ACLYP53396 1101 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 HNRNPUQ00839 825 aaKnown RBP eCLIP12.86□□□□□ -0.35
SYNE2-221ENST00000556342 FAAP100Q0VG06 881 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 UBE3CQ15386 1083 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 RPAP2Q8IXW5 612 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-221ENST00000556342 MSL3Q8N5Y2 521 aaKnown RBP12.86□□□□□ -0.35
SYNE2-221ENST00000556342 NUP133Q8WUM0 1156 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 TOX2Q96NM4 488 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 HAUS7Q99871 368 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.86□□□□□ -0.35
SYNE2-221ENST00000556342 TEX13BQ9BXU2 312 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 STARD7Q9NQZ5 370 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 SLC4A4Q9Y6R1 1079 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 SMCHD1A6NHR9 2005 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 SYNRGQ9UMZ2 1314 aa12.86□□□□□ -0.35
SYNE2-221ENST00000556342 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-221ENST00000556342 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-221ENST00000556342 MOXD2PA6NHM9 499 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 DCDC2CA8MYV0 355 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 RAB11FIP3O75154 756 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 DNAJB2P25686 324 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 GRIN2CQ14957 1233 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 SMYD5Q6GMV2 418 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 CTR9Q6PD62 1173 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 SIRT2Q8IXJ6 389 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 KLHDC9Q8NEP7 349 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 SEPT9Q9UHD8 586 aaPredicted RBP12.85□□□□□ -0.35
SYNE2-221ENST00000556342 FAM184BQ9ULE4 1060 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 SYNGAP1Q96PV0 1343 aa12.85□□□□□ -0.35
SYNE2-221ENST00000556342 DNAJC25-GNG10A0A024R161 153 aa12.84□□□□□ -0.35
SYNE2-221ENST00000556342 SNAI1O95863 264 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-221ENST00000556342 SNRNP48Q6IEG0 339 aaKnown RBP12.84□□□□□ -0.35
SYNE2-221ENST00000556342 CCSAPQ6IQ19 270 aaPredicted RBP12.84□□□□□ -0.35
SYNE2-221ENST00000556342 MAMDC4Q6UXC1 1216 aa12.84□□□□□ -0.35
SYNE2-221ENST00000556342 TTC13Q8NBP0 860 aa12.84□□□□□ -0.35
SYNE2-221ENST00000556342 ANKK1Q8NFD2 765 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms