RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 CCDC96Q2M329 555 aa16.79■□□□□ 0.28
VPS33B-205ENST00000556096 SLFN13Q68D06 897 aa16.79■□□□□ 0.28
VPS33B-205ENST00000556096 PPP1R18Q6NYC8 613 aa16.79■□□□□ 0.28
VPS33B-205ENST00000556096 KRT25Q7Z3Z0 450 aa16.79■□□□□ 0.28
VPS33B-205ENST00000556096 ADGRF4Q8IZF3 695 aa16.79■□□□□ 0.28
VPS33B-205ENST00000556096 CSRNP2Q9H175 543 aa16.79■□□□□ 0.28
VPS33B-205ENST00000556096 CBX8Q9HC52 389 aa16.79■□□□□ 0.28
VPS33B-205ENST00000556096 GDF11O95390 407 aa16.78■□□□□ 0.28
VPS33B-205ENST00000556096 GH2P01242 217 aa16.78■□□□□ 0.28
VPS33B-205ENST00000556096 ZNF165P49910 485 aa16.78■□□□□ 0.28
VPS33B-205ENST00000556096 SHROOM1Q2M3G4 852 aaPredicted RBP16.78■□□□□ 0.28
VPS33B-205ENST00000556096 ARL6IP4Q66PJ3 421 aaKnown RBP16.78■□□□□ 0.28
VPS33B-205ENST00000556096 KRBA2Q6ZNG9 492 aa16.78■□□□□ 0.28
VPS33B-205ENST00000556096 GMCL1Q96IK5 515 aa16.78■□□□□ 0.28
VPS33B-205ENST00000556096 CLEC11AQ9Y240 323 aa16.78■□□□□ 0.28
VPS33B-205ENST00000556096 KIF3CO14782 793 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 SLC1A4P43007 532 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 JAG1P78504 1218 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 MAP3K10Q02779 954 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 RRP1BQ14684 758 aaKnown RBP16.77■□□□□ 0.28
VPS33B-205ENST00000556096 TTBK2Q6IQ55 1244 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 C4orf32Q8N8J7 132 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 RASGRP4Q8TDF6 673 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 DNAJC25Q9H1X3 360 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 PGAP2Q9UHJ9 254 aa16.77■□□□□ 0.28
VPS33B-205ENST00000556096 F5H6K3 240 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 ZBTB5O15062 677 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 KLRC3Q07444 240 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 LONRF3Q496Y0 759 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 SPECC1Q5M775 1068 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 KCTD1Q719H9 257 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 CNNM3Q8NE01 707 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 TRIM44Q96DX7 344 aaPredicted RBP16.76■□□□□ 0.27
VPS33B-205ENST00000556096 HOOK1Q9UJC3 728 aaKnown RBP16.76■□□□□ 0.27
VPS33B-205ENST00000556096 TUBE1Q9UJT0 475 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 MCM7P33993 719 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 TNNI2P48788 182 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 NONOQ15233 471 aaKnown RBP eCLIP16.76■□□□□ 0.27
VPS33B-205ENST00000556096 KANK3Q6NY19 840 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 DLK2Q6UY11 383 aa16.76■□□□□ 0.27
VPS33B-205ENST00000556096 ORC2Q13416 577 aaPredicted RBP16.75■□□□□ 0.27
VPS33B-205ENST00000556096 ZRSR1Q15695 479 aaKnown RBP16.75■□□□□ 0.27
VPS33B-205ENST00000556096 HS1BP3Q53T59 392 aa16.75■□□□□ 0.27
VPS33B-205ENST00000556096 LUZP1Q86V48 1076 aa16.75■□□□□ 0.27
VPS33B-205ENST00000556096 COA7Q96BR5 231 aa16.75■□□□□ 0.27
VPS33B-205ENST00000556096 TMEM39BQ9GZU3 492 aa16.75■□□□□ 0.27
VPS33B-205ENST00000556096 USP25Q9UHP3 1055 aa16.75■□□□□ 0.27
VPS33B-205ENST00000556096 POLR2AP24928 1970 aaKnown RBP16.75■□□□□ 0.27
VPS33B-205ENST00000556096 USP17L10C9JJH3 530 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 LAD1O00515 517 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 POLR2DO15514 142 aaKnown RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 SLC16A2P36021 539 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 ADCY7P51828 1080 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 NLRP12P59046 1061 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 MDM2Q00987 491 aaPredicted RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 IQCB1Q15051 598 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 INF2Q27J81 1249 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 ANGEL2Q5VTE6 544 aaKnown RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 MAP1SQ66K74 1059 aaPredicted RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 C11orf57Q6ZUT1 292 aaPredicted RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 USP50Q70EL3 339 aaPredicted RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 REXO1Q8N1G1 1221 aaKnown RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 ERCC4Q92889 916 aaPredicted RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 NAT10Q9H0A0 1025 aaKnown RBP16.74■□□□□ 0.27
VPS33B-205ENST00000556096 ARHGEF10LQ9HCE6 1279 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 RIC8AQ9NPQ8 531 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 GGA3Q9NZ52 723 aa16.74■□□□□ 0.27
VPS33B-205ENST00000556096 PPP1R11O60927 126 aaPredicted RBP16.73■□□□□ 0.27
VPS33B-205ENST00000556096 NDUFB10O96000 172 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 LONP1P36776 959 aaKnown RBP16.73■□□□□ 0.27
VPS33B-205ENST00000556096 TNFAIP1Q13829 316 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 BTNL9Q6UXG8 535 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 USP49Q70CQ1 688 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 CEP57L1Q8IYX8 460 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 BPIFA3Q9BQP9 254 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 PYM1Q9BRP8 204 aaKnown RBP16.73■□□□□ 0.27
VPS33B-205ENST00000556096 GLT8D2Q9H1C3 349 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 A0A1W2PRG0 241 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 VWA3AA6NCI4 1184 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 ADCY5O95622 1261 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 PRPHP41219 470 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 NEK8Q86SG6 692 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 PNMA8AQ86V59 439 aaPredicted RBP16.73■□□□□ 0.27
VPS33B-205ENST00000556096 CDAN1Q8IWY9 1227 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 SYMPKQ92797 1274 aaKnown RBP16.73■□□□□ 0.27
VPS33B-205ENST00000556096 CCDC34Q96HJ3 373 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 EPSTI1Q96J88 318 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 SERTAD1Q9UHV2 236 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 ZBTB21Q9ULJ3 1066 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 TMX2Q9Y320 296 aa16.73■□□□□ 0.27
VPS33B-205ENST00000556096 ACTN4O43707 911 aaKnown RBP16.72■□□□□ 0.27
VPS33B-205ENST00000556096 BMP3P12645 472 aa16.72■□□□□ 0.27
VPS33B-205ENST00000556096 MRPL12P52815 198 aaKnown RBP16.72■□□□□ 0.27
VPS33B-205ENST00000556096 IL17AQ16552 155 aa16.72■□□□□ 0.27
VPS33B-205ENST00000556096 BIN2Q9UBW5 565 aaPredicted RBP16.72■□□□□ 0.27
VPS33B-205ENST00000556096 RAD21O60216 631 aa16.71■□□□□ 0.27
VPS33B-205ENST00000556096 CAP2P40123 477 aa16.71■□□□□ 0.27
VPS33B-205ENST00000556096 CLK2P49760 499 aaKnown RBP16.71■□□□□ 0.27
VPS33B-205ENST00000556096 FMR1Q06787 632 aaKnown RBP eCLIP16.71■□□□□ 0.27
VPS33B-205ENST00000556096 PNOCQ13519 176 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms