RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 RANBP17Q9H2T7 1088 aaKnown RBP24.18■■□□□ 1.46
CCDC88C-210ENST00000555995 RIPK3Q9Y572 518 aa24.18■■□□□ 1.46
CCDC88C-210ENST00000555995 BRCA2P51587 3418 aa24.18■■□□□ 1.46
CCDC88C-210ENST00000555995 PFASO15067 1338 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 FRMPD2Q68DX3 1309 aaPredicted RBP24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 IGHA2P01877 340 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 CYBAP13498 195 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 CYP2C19P33261 490 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 ZNF792Q3KQV3 632 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 CHMP4CQ96CF2 233 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 GPCPD1Q9NPB8 672 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 ANO2Q9NQ90 1003 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 RNF146Q9NTX7 359 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 OGDHLQ9ULD0 1010 aa24.17■■□□□ 1.46
CCDC88C-210ENST00000555995 E7EWF7 191 aa24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 ICAM1P05362 532 aa24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 CCND3P30281 292 aaPredicted RBP24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 PRPF38BQ5VTL8 546 aaKnown RBP24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 RASGRP2Q7LDG7 609 aa24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 UBE2Q1Q7Z7E8 422 aa24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 ZNF467Q7Z7K2 595 aaPredicted RBP24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 LSG1Q9H089 658 aaKnown RBP24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 PPP4R2Q9NY27 417 aa24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 CCPG1Q9ULG6 757 aa24.16■■□□□ 1.46
CCDC88C-210ENST00000555995 ZNF536O15090 1300 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 PGK2P07205 417 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 CNGA1P29973 690 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 RNF20Q5VTR2 975 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 CCDC174Q6PII3 467 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 NECAB2Q7Z6G3 386 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 TINF2Q9BSI4 451 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 MTA3Q9BTC8 594 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 HOMER2Q9NSB8 354 aa24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 DDX20Q9UHI6 824 aaKnown RBP24.15■■□□□ 1.46
CCDC88C-210ENST00000555995 WDR19Q8NEZ3 1342 aa24.14■■□□□ 1.46
CCDC88C-210ENST00000555995 SYNGAP1Q96PV0 1343 aa24.14■■□□□ 1.46
CCDC88C-210ENST00000555995 DNAJC25-GNG10A0A024R161 153 aa24.14■■□□□ 1.45
CCDC88C-210ENST00000555995 ALAS1P13196 640 aa24.14■■□□□ 1.45
CCDC88C-210ENST00000555995 TTBK2Q6IQ55 1244 aa24.14■■□□□ 1.45
CCDC88C-210ENST00000555995 AGBL1Q96MI9 1066 aa24.14■■□□□ 1.45
CCDC88C-210ENST00000555995 TRERF1Q96PN7 1200 aa24.14■■□□□ 1.45
CCDC88C-210ENST00000555995 CNPY2Q9Y2B0 182 aa24.14■■□□□ 1.45
CCDC88C-210ENST00000555995 SEPT4O43236 478 aa24.13■■□□□ 1.45
CCDC88C-210ENST00000555995 PARP1P09874 1014 aaKnown RBP24.13■■□□□ 1.45
CCDC88C-210ENST00000555995 SLC16A2P36021 539 aa24.13■■□□□ 1.45
CCDC88C-210ENST00000555995 SEC23AQ15436 765 aa24.13■■□□□ 1.45
CCDC88C-210ENST00000555995 IFIT3O14879 490 aaKnown RBP24.12■■□□□ 1.45
CCDC88C-210ENST00000555995 CYB5R4Q7L1T6 521 aa24.12■■□□□ 1.45
CCDC88C-210ENST00000555995 SKAP1Q86WV1 359 aa24.12■■□□□ 1.45
CCDC88C-210ENST00000555995 MYH6P13533 1939 aa24.12■■□□□ 1.45
CCDC88C-210ENST00000555995 POTEB2H3BUK9 544 aa24.11■■□□□ 1.45
CCDC88C-210ENST00000555995 WTAPQ15007 396 aa24.11■■□□□ 1.45
CCDC88C-210ENST00000555995 LHX8Q68G74 356 aa24.11■■□□□ 1.45
CCDC88C-210ENST00000555995 MAMDC4Q6UXC1 1216 aa24.11■■□□□ 1.45
CCDC88C-210ENST00000555995 MAF1Q9H063 256 aa24.11■■□□□ 1.45
CCDC88C-210ENST00000555995 A1CFQ9NQ94 594 aaKnown RBP24.11■■□□□ 1.45
CCDC88C-210ENST00000555995 SLC27A2O14975 620 aa24.09■■□□□ 1.45
CCDC88C-210ENST00000555995 MCM5P33992 734 aa24.09■■□□□ 1.45
CCDC88C-210ENST00000555995 CREB3L3Q68CJ9 461 aa24.09■■□□□ 1.45
CCDC88C-210ENST00000555995 STOX1Q6ZVD7 989 aa24.09■■□□□ 1.45
CCDC88C-210ENST00000555995 MB21D2Q8IYB1 491 aaPredicted RBP24.09■■□□□ 1.45
CCDC88C-210ENST00000555995 TRPV1Q8NER1 839 aa24.09■■□□□ 1.45
CCDC88C-210ENST00000555995 PAWRQ96IZ0 340 aaKnown RBP24.09■■□□□ 1.45
CCDC88C-210ENST00000555995 GOLGA8HP0CJ92 632 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 AKR1A1P14550 325 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 SNAP25P60880 206 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 NECTIN1Q15223 517 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 TMEM67Q5HYA8 995 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 FAM133AQ8N9E0 248 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 ARRDC4Q8NCT1 418 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 DPF3Q92784 378 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 TMEM87BQ96K49 555 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 C11orf49Q9H6J7 331 aa24.08■■□□□ 1.45
CCDC88C-210ENST00000555995 LOC102724159A0A0B4J2E5 919 aa24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 ASB14A6NK59 587 aa24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 DHX16O60231 1041 aaKnown RBP24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 TRAF1Q13077 416 aa24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 PWP2Q15269 919 aaKnown RBP24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 NSMFQ6X4W1 530 aa24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 CATIPQ7Z7H3 387 aa24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 TMTC2Q8N394 836 aa24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 CYP39A1Q9NYL5 469 aa24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 NR2E3Q9Y5X4 410 aa24.07■■□□□ 1.44
CCDC88C-210ENST00000555995 MCM3APO60318 1980 aa24.06■■□□□ 1.44
CCDC88C-210ENST00000555995 RARBP10826 455 aa24.06■■□□□ 1.44
CCDC88C-210ENST00000555995 CDC37Q16543 378 aaPredicted RBP24.06■■□□□ 1.44
CCDC88C-210ENST00000555995 MPHOSPH6Q99547 160 aaKnown RBP24.06■■□□□ 1.44
CCDC88C-210ENST00000555995 UBA5Q9GZZ9 404 aa24.06■■□□□ 1.44
CCDC88C-210ENST00000555995 ABHD16BQ9H3Z7 469 aa24.06■■□□□ 1.44
CCDC88C-210ENST00000555995 ADD3Q9UEY8 706 aaKnown RBP24.06■■□□□ 1.44
CCDC88C-210ENST00000555995 TAF6LQ9Y6J9 622 aa24.06■■□□□ 1.44
CCDC88C-210ENST00000555995 KBTBD13C9JR72 458 aa24.05■■□□□ 1.44
CCDC88C-210ENST00000555995 DNM1LO00429 736 aa24.05■■□□□ 1.44
CCDC88C-210ENST00000555995 KRT32Q14532 448 aa24.05■■□□□ 1.44
CCDC88C-210ENST00000555995 MUM1L1Q5H9M0 696 aa24.05■■□□□ 1.44
CCDC88C-210ENST00000555995 ADGRF4Q8IZF3 695 aa24.05■■□□□ 1.44
CCDC88C-210ENST00000555995 DIS3LQ8TF46 1054 aaKnown RBP24.05■■□□□ 1.44
CCDC88C-210ENST00000555995 MAP3K14Q99558 947 aa24.05■■□□□ 1.44
CCDC88C-210ENST00000555995 ABCB11O95342 1321 aa24.05■■□□□ 1.44
CCDC88C-210ENST00000555995 MKI67P46013 3256 aaKnown RBP24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms