RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 PPP1R12AO14974 1030 aaPredicted RBP8.37□□□□□ -1.07
LINC00643-204ENST00000555934 SNRPB2P08579 225 aaKnown RBP8.37□□□□□ -1.07
LINC00643-204ENST00000555934 PABPC1P11940 636 aaKnown RBP8.37□□□□□ -1.07
LINC00643-204ENST00000555934 IFNGR1P15260 489 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 HSD3B2P26439 372 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 LTKP29376 864 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 ECI1P42126 302 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 CD97P48960 835 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 POU4F1Q01851 419 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 BNIP3Q12983 259 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 AOC3Q16853 763 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 MSMPQ1L6U9 139 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 TKFCQ3LXA3 575 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 EGFLAMQ63HQ2 1017 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 NSMFQ6X4W1 530 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 USHBP1Q8N6Y0 703 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 HRASLS5Q96KN8 279 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 IPO9Q96P70 1041 aaKnown RBP8.37□□□□□ -1.07
LINC00643-204ENST00000555934 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.37□□□□□ -1.07
LINC00643-204ENST00000555934 PCDHA11Q9Y5I1 949 aa8.37□□□□□ -1.07
LINC00643-204ENST00000555934 PITPNM2Q9BZ72 1349 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 TRBV23-1A0A0A0MS06 115 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 BLACEA4D250 179 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 MED26O95402 600 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 GSTM1P09488 218 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 SSTR4P31391 388 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 SCRN1Q12765 414 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 GRB10Q13322 594 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 TMEM67Q5HYA8 995 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 ARTNQ5T4W7 220 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 SLC26A8Q96RN1 970 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 NKX2-4Q9H2Z4 354 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 TCFL5Q9UL49 500 aa8.36□□□□□ -1.07
LINC00643-204ENST00000555934 VAV1P15498 845 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 PCBP3P57721 371 aaKnown RBP8.35□□□□□ -1.07
LINC00643-204ENST00000555934 CBX2Q14781 532 aaPredicted RBP8.35□□□□□ -1.07
LINC00643-204ENST00000555934 GAB4Q2WGN9 574 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 ZPBP2Q6X784 338 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 C16orf86Q6ZW13 317 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 THAP5Q7Z6K1 395 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 TMEM145Q8NBT3 493 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 OSBP2Q969R2 916 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 FCRL3Q96P31 734 aaPredicted RBP8.35□□□□□ -1.07
LINC00643-204ENST00000555934 DHRS4Q9BTZ2 278 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 SLC12A9Q9BXP2 914 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 GPRC5CQ9NQ84 441 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 MRPS23Q9Y3D9 190 aaKnown RBP8.35□□□□□ -1.07
LINC00643-204ENST00000555934 CD2APQ9Y5K6 639 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 SBNO2Q9Y2G9 1366 aa8.35□□□□□ -1.07
LINC00643-204ENST00000555934 KIAA1324LA8MWY0 1029 aaPredicted RBP8.34□□□□□ -1.07
LINC00643-204ENST00000555934 DLX3O60479 287 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 CLSTN1O94985 981 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 FGFR1P11362 822 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 BMP8BP34820 402 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 GFRA1P56159 465 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 EGR3Q06889 387 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 LONRF2Q1L5Z9 754 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 CDADC1Q9BWV3 514 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 SNX11Q9Y5W9 270 aa8.34□□□□□ -1.07
LINC00643-204ENST00000555934 C2orf71A6NGG8 1288 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 AURKAO14965 403 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 ESR1P03372 595 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 CAPNS1P04632 268 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 RPL10P27635 214 aaKnown RBP8.33□□□□□ -1.08
LINC00643-204ENST00000555934 HOXC12P31275 282 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 NOP2P46087 812 aaKnown RBP8.33□□□□□ -1.08
LINC00643-204ENST00000555934 CYP4F3Q08477 520 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 IKZF1Q13422 519 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 LRP8Q14114 963 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 LCE3BQ5TA77 95 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 SCUBE1Q8IWY4 988 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 KISS1RQ969F8 398 aaPredicted RBP8.33□□□□□ -1.08
LINC00643-204ENST00000555934 ZFP64Q9NPA5 681 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 CYP26B1Q9NR63 512 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 AP5S1Q9NUS5 200 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 BACE2Q9Y5Z0 518 aa8.33□□□□□ -1.08
LINC00643-204ENST00000555934 ZNF205O95201 554 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 SPINK2P20155 84 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 PRKCQQ04759 706 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 PLEKHG4Q58EX7 1191 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 ZNF574Q6ZN55 896 aaPredicted RBP8.32□□□□□ -1.08
LINC00643-204ENST00000555934 USP53Q70EK8 1073 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 DTX1Q86Y01 620 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 LINC00116Q8NCU8 138 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 ASB11Q8WXH4 323 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 KCTD13Q8WZ19 329 aa8.32□□□□□ -1.08
LINC00643-204ENST00000555934 SCO2A0A1W2PP80 73 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 RAPGEF3O95398 923 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 THBDP07204 575 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 SEPHS1P49903 392 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 SUMO1P63165 101 aaKnown RBP8.31□□□□□ -1.08
LINC00643-204ENST00000555934 TCEA2Q15560 299 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 ZC3H12BQ5HYM0 836 aaKnown RBP8.31□□□□□ -1.08
LINC00643-204ENST00000555934 RTP2Q5QGT7 225 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 TMPRSS7Q7RTY8 843 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 WAPLQ7Z5K2 1190 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 CARS2Q9HA77 564 aaKnown RBP8.31□□□□□ -1.08
LINC00643-204ENST00000555934 PCMTD2Q9NV79 361 aa8.31□□□□□ -1.08
LINC00643-204ENST00000555934 BSDC1Q9NW68 430 aaPredicted RBP8.31□□□□□ -1.08
LINC00643-204ENST00000555934 CLEC1BQ9P126 229 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms