RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 AMOTL1Q8IY63 956 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 TNS4Q8IZW8 715 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.74□□□□□ -1.01
LIMA1-216ENST00000552909 NAPBQ9H115 298 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 ZFYVE28Q9HCC9 887 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 CABP5Q9NP86 173 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 EMILIN3Q9NT22 766 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 SWAP70Q9UH65 585 aa8.74□□□□□ -1.01
LIMA1-216ENST00000552909 FKTNO75072 461 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 ZKSCAN1P17029 563 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-216ENST00000552909 CTDSPL2Q05D32 466 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 NOM1Q5C9Z4 860 aaKnown RBP8.73□□□□□ -1.01
LIMA1-216ENST00000552909 SH3D19Q5HYK7 790 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 SRLQ86TD4 932 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 CCDC83Q8IWF9 413 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 GOLGA5Q8TBA6 731 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 CHMP4CQ96CF2 233 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 MYCBPQ99417 103 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-216ENST00000552909 NACAP1Q9BZK3 213 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 AS3MTQ9HBK9 375 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 GINM1Q9NU53 330 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 CPA4Q9UI42 421 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 AGTPBP1Q9UPW5 1226 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.73□□□□□ -1.014e-6■■■■□ 22
LIMA1-216ENST00000552909 SLC27A2O14975 620 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 PEX10O60683 326 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 TUBB4AP04350 444 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 RASA1P20936 1047 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 OAS2P29728 719 aaKnown RBP8.73□□□□□ -1.01
LIMA1-216ENST00000552909 PPARAQ07869 468 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 KIAA1755Q5JYT7 1200 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 C17orf99Q6UX52 265 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 PROCA1Q8NCQ7 364 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-216ENST00000552909 FBXO18Q8NFZ0 1043 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 CD99L2Q8TCZ2 262 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 UBXN4Q92575 508 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 LARP6Q9BRS8 491 aaKnown RBP8.73□□□□□ -1.01
LIMA1-216ENST00000552909 ARHGAP39Q9C0H5 1083 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 MKNK2Q9HBH9 465 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 ZCCHC17Q9NP64 241 aaKnown RBP8.73□□□□□ -1.01
LIMA1-216ENST00000552909 LCMT1Q9UIC8 334 aa8.73□□□□□ -1.01
LIMA1-216ENST00000552909 U3KPZ7 1027 aaPredicted RBP8.73□□□□□ -1.01
LIMA1-216ENST00000552909 ROBO3Q96MS0 1386 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 ZSWIM8A7E2V4 1837 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 LOC102724159A0A0B4J2E5 919 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 CTGFP29279 349 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 GYS2P54840 703 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 GSDMDP57764 484 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 SP3Q02447 781 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 PWP2Q15269 919 aaKnown RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 ADCK5Q3MIX3 580 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 TMEM179Q6ZVK1 233 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 NKX2-3Q8TAU0 364 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 KCNB2Q92953 911 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 DSCC1Q9BVC3 393 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 UBXN6Q9BZV1 441 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 MCOLN1Q9GZU1 580 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 SCAND2PQ9GZW5 306 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 ORC3Q9UBD5 711 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 RRP15Q9Y3B9 282 aaKnown RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 ADGRA2Q96PE1 1338 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 LOC285556D6RIA3 1793 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 C19orf81C9J6K1 198 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 LARGE1O95461 756 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 TPM1P09493 284 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 CASTP20810 708 aaKnown RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 GUCY2CP25092 1073 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 HAND2P61296 217 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 ALX1Q15699 326 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 FAM47AQ5JRC9 791 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 POTEEQ6S8J3 1075 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 LRRN4CLQ8ND94 238 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 ZSCAN31Q96LW9 406 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 CCDC17Q96LX7 622 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 JAKMIP1Q96N16 626 aaKnown RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 NCAPGQ9BPX3 1015 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 ASCC2Q9H1I8 757 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 SH2B1Q9NRF2 756 aaPredicted RBP8.72□□□□□ -1.01
LIMA1-216ENST00000552909 TAF6LQ9Y6J9 622 aa8.72□□□□□ -1.01
LIMA1-216ENST00000552909 DOCK3Q8IZD9 2030 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 EEF2P13639 858 aaKnown RBP8.71□□□□□ -1.01
LIMA1-216ENST00000552909 CPA1P15085 419 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 PSEN1P49768 467 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 ICA1Q05084 483 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 IQCB1Q15051 598 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 SPATA32Q96LK8 384 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 PARK7Q99497 189 aaKnown RBP8.71□□□□□ -1.01
LIMA1-216ENST00000552909 P2RX7Q99572 595 aaKnown RBP8.71□□□□□ -1.01
LIMA1-216ENST00000552909 NBPF3Q9H094 633 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 KIAA1683Q9H0B3 1180 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 TMOD4Q9NZQ9 345 aa8.71□□□□□ -1.01
LIMA1-216ENST00000552909 CLGNO14967 610 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 CYP21A2P08686 494 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 BCRP11274 1271 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 VCAM1P19320 739 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 HOXA7P31268 230 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-216ENST00000552909 ATP2B2Q01814 1243 aa8.71□□□□□ -1.02
LIMA1-216ENST00000552909 SMC1AQ14683 1233 aaKnown RBP8.71□□□□□ -1.02
LIMA1-216ENST00000552909 TTC31Q49AM3 519 aaPredicted RBP8.71□□□□□ -1.02
LIMA1-216ENST00000552909 AXDND1Q5T1B0 1012 aaPredicted RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms