RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ZMYND12Q9H0C1 365 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 MAP3K20Q9NYL2 800 aaKnown RBP11.07□□□□□ -0.64
LIMA1-211ENST00000552338 ZNF536O15090 1300 aa11.07□□□□□ -0.64
LIMA1-211ENST00000552338 CCL15-CCL14A0A0B4J2E2 113 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 BTBD19C9JJ37 291 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 PPP1R11O60927 126 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-211ENST00000552338 FLOT1O75955 427 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 ICAM1P05362 532 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 HSP90AA1P07900 732 aaKnown RBP11.06□□□□□ -0.64
LIMA1-211ENST00000552338 XBP1P17861 261 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 SYT1P21579 422 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 OSBPP22059 807 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 SLC16A2P36021 539 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 SLC4A3P48751 1232 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 NOGQ13253 232 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 NPY5RQ15761 445 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 CCL15Q16663 113 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 QRICH1Q2TAL8 776 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 POTEEQ6S8J3 1075 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 FAM184AQ8NB25 1140 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 SHISA4Q96DD7 197 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 PIGSQ96S52 555 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 PTPN18Q99952 460 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 ALG1Q9BT22 464 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 AMNQ9BXJ7 453 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 CFHR5Q9BXR6 569 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 GLT8D2Q9H1C3 349 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 ASCC2Q9H1I8 757 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-211ENST00000552338 FBXO28Q9NVF7 368 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 DAXXQ9UER7 740 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-211ENST00000552338 PNMA3Q9UL41 463 aa11.06□□□□□ -0.64
LIMA1-211ENST00000552338 ZNF214Q9UL59 606 aaPredicted RBP11.06□□□□□ -0.64
LIMA1-211ENST00000552338 RBBP6Q7Z6E9 1792 aaKnown RBP11.05□□□□□ -0.64
LIMA1-211ENST00000552338 TCHHQ07283 1943 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 ZNFX1Q9P2E3 1918 aaKnown RBP11.05□□□□□ -0.64
LIMA1-211ENST00000552338 MYH15Q9Y2K3 1946 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 M0R2N6 131 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 STXBP3O00186 592 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 STX6O43752 255 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 BRD1O95696 1058 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 MAP2K2P36507 400 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 NUCB2P80303 420 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 SREBF2Q12772 1141 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 CDC37Q16543 378 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-211ENST00000552338 TKFCQ3LXA3 575 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 LARP1BQ659C4 914 aaKnown RBP11.05□□□□□ -0.64
LIMA1-211ENST00000552338 WWC2Q6AWC2 1192 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 GADL1Q6ZQY3 521 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 CCDC82Q8N4S0 544 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 CCDC148Q8NFR7 591 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 CCDC12Q8WUD4 166 aaPredicted RBP11.05□□□□□ -0.64
LIMA1-211ENST00000552338 TANGO6Q9C0B7 1094 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 CPVLQ9H3G5 476 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 MORF4L1Q9UBU8 362 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 SEC63Q9UGP8 760 aaKnown RBP11.05□□□□□ -0.64
LIMA1-211ENST00000552338 ABT1Q9ULW3 272 aaKnown RBP11.05□□□□□ -0.64
LIMA1-211ENST00000552338 MTMR7Q9Y216 660 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 RABGAP1Q9Y3P9 1069 aa11.05□□□□□ -0.64
LIMA1-211ENST00000552338 PIK3CDO00329 1044 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 RAD21O60216 631 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 ZBED4O75132 1171 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 MMP1P03956 469 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 U2AF2P26368 475 aaKnown RBP eCLIP11.04□□□□□ -0.64
LIMA1-211ENST00000552338 CALML3P27482 149 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 GCLCP48506 637 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-211ENST00000552338 CLK2P49760 499 aaKnown RBP11.04□□□□□ -0.64
LIMA1-211ENST00000552338 HERVK_113P62684 666 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 KRT40Q6A162 431 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 MCTP2Q6DN12 878 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 TYW1BQ6NUM6 668 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 FBXO11Q86XK2 927 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 IFNL1Q8IU54 200 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 KIFC2Q96AC6 838 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 ATG4CQ96DT6 458 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 DDX11Q96FC9 970 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 C8orf76Q96K31 380 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 P2RX7Q99572 595 aaKnown RBP11.04□□□□□ -0.64
LIMA1-211ENST00000552338 FOXP1Q9H334 677 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-211ENST00000552338 VAT1LQ9HCJ6 419 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 CHMP5Q9NZZ3 219 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 MTMR6Q9Y217 621 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 ZDHHC9Q9Y397 364 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 ABCB11O95342 1321 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 ADGRA2Q96PE1 1338 aa11.04□□□□□ -0.64
LIMA1-211ENST00000552338 PDHXO00330 501 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 IGF2BP3O00425 579 aaKnown RBP eCLIP11.03□□□□□ -0.64
LIMA1-211ENST00000552338 CNMDO75829 334 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 ALDH1A1P00352 501 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 GNA11P29992 359 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 COPB2P35606 906 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 IRX3P78415 501 aaPredicted RBP11.03□□□□□ -0.64
LIMA1-211ENST00000552338 TMEM132BQ14DG7 1078 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 OTUD7BQ6GQQ9 843 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 CLEC17AQ6ZS10 378 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 RIOX2Q8IUF8 465 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 FAM43AQ8N2R8 423 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 SHCBP1Q8NEM2 672 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 TNFRSF25Q93038 417 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 AIFM3Q96NN9 605 aa11.03□□□□□ -0.64
LIMA1-211ENST00000552338 ZSCAN16Q9H4T2 348 aaPredicted RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms