RNA–Protein interactions for RNA: ENST00000547672.5

PTCH1-215, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 881 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-215ENST00000547672 CNNM3Q8NE01 707 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 FAM200AQ8TCP9 573 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 FHDC1Q9C0D6 1143 aaPredicted RBP15.3■□□□□ 0.04
PTCH1-215ENST00000547672 PSTPIP2Q9H939 334 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 GPRC5DQ9NZD1 345 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 KIAA1468Q9P260 1216 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 FEM1BQ9UK73 627 aa15.3■□□□□ 0.04
PTCH1-215ENST00000547672 BAZ2BQ9UIF8 2168 aaKnown RBP15.29■□□□□ 0.04
PTCH1-215ENST00000547672 GCFC2P16383 781 aaKnown RBP15.29■□□□□ 0.04
PTCH1-215ENST00000547672 STAT2P52630 851 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 SLC35G1Q2M3R5 365 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 FBXO11Q86XK2 927 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 CKAP2LQ8IYA6 745 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 LPAR1Q92633 364 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 SHISA4Q96DD7 197 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 AK8Q96MA6 479 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 ZNF341Q9BYN7 854 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 RAB34Q9BZG1 259 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 DEFB129Q9H1M3 183 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 VCPKMTQ9H867 229 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 PGAP2Q9UHJ9 254 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 HACL1Q9UJ83 578 aa15.29■□□□□ 0.04
PTCH1-215ENST00000547672 PITPNM2Q9BZ72 1349 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 DICER1Q9UPY3 1922 aaKnown RBP15.28■□□□□ 0.04
PTCH1-215ENST00000547672 USP17L10C9JJH3 530 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 TMEM232C9JQI7 657 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 SMC2O95347 1197 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 FDX1P10109 184 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 MCM7P33993 719 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 USP14P54578 494 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 SEMA3FQ13275 785 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 TBC1D10BQ4KMP7 808 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-215ENST00000547672 DPY19L2Q6NUT2 758 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 CEP57L1Q8IYX8 460 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 IQUBQ8NA54 791 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 TRIM44Q96DX7 344 aaPredicted RBP15.28■□□□□ 0.04
PTCH1-215ENST00000547672 AS3MTQ9HBK9 375 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 PCDHA1Q9Y5I3 950 aa15.28■□□□□ 0.04
PTCH1-215ENST00000547672 VEGFAP15692 232 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-215ENST00000547672 SLC16A2P36021 539 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 TPM4P67936 248 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 AP3B2Q13367 1082 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 CDC37Q16543 378 aaPredicted RBP15.27■□□□□ 0.04
PTCH1-215ENST00000547672 TTBK2Q6IQ55 1244 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 KRBA2Q6ZNG9 492 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 MIGA2Q7L4E1 593 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 SAMD7Q7Z3H4 446 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 CLEC10AQ8IUN9 316 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 CLIC6Q96NY7 704 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 PPP1R9BQ96SB3 815 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 FEZ1Q99689 392 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 CSRNP2Q9H175 543 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 CCDC39Q9UFE4 941 aa15.27■□□□□ 0.04
PTCH1-215ENST00000547672 PHF20L1A8MW92 1017 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 GOLGA6L19H0YKK7 550 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 ZNF165P49910 485 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 USP11P51784 963 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 INF2Q27J81 1249 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 QRICH1Q2TAL8 776 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 EARS2Q5JPH6 523 aaKnown RBP15.26■□□□□ 0.03
PTCH1-215ENST00000547672 CT47A1Q5JQC4 288 aaPredicted RBP15.26■□□□□ 0.03
PTCH1-215ENST00000547672 TYW1BQ6NUM6 668 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 SAMD3Q8N6K7 520 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 COA7Q96BR5 231 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 TEPSINQ96N21 525 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 SYT17Q9BSW7 474 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 GTPBP4Q9BZE4 634 aaKnown RBP15.26■□□□□ 0.03
PTCH1-215ENST00000547672 KIAA1683Q9H0B3 1180 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 CPVLQ9H3G5 476 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 EHMT1Q9H9B1 1298 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 PICK1Q9NRD5 415 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 ADARB2Q9NS39 739 aaKnown RBP15.26■□□□□ 0.03
PTCH1-215ENST00000547672 DACH1Q9UI36 760 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 MRVI1Q9Y6F6 885 aa15.26■□□□□ 0.03
PTCH1-215ENST00000547672 ZNF541Q9H0D2 1346 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 SMTNL1A8MU46 457 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 BECN2A8MW95 431 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 POLR2DO15514 142 aaKnown RBP15.25■□□□□ 0.03
PTCH1-215ENST00000547672 NEMFO60524 1076 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 CCNT1O60563 726 aaKnown RBP15.25■□□□□ 0.03
PTCH1-215ENST00000547672 SLFN14P0C7P3 912 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 NLRP12P59046 1061 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 TMEM266Q2M3C6 531 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 ANO6Q4KMQ2 910 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 PPP4R3AQ6IN85 833 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 TRIML1Q8N9V2 468 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 RNF214Q8ND24 703 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 TBCKQ8TEA7 893 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 CUEDC2Q9H467 287 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 BIN2Q9UBW5 565 aaPredicted RBP15.25■□□□□ 0.03
PTCH1-215ENST00000547672 ZNF112Q9UJU3 913 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 MRPL11Q9Y3B7 192 aaKnown RBP15.25■□□□□ 0.03
PTCH1-215ENST00000547672 STK24Q9Y6E0 443 aa15.25■□□□□ 0.03
PTCH1-215ENST00000547672 ZC3H4Q9UPT8 1303 aaKnown RBP15.24■□□□□ 0.03
PTCH1-215ENST00000547672 A0A1W2PRG0 241 aa15.24■□□□□ 0.03
PTCH1-215ENST00000547672 VWA3AA6NCI4 1184 aa15.24■□□□□ 0.03
PTCH1-215ENST00000547672 FAM205CA6NFA0 338 aa15.24■□□□□ 0.03
PTCH1-215ENST00000547672 WDR46O15213 610 aaKnown RBP15.24■□□□□ 0.03
PTCH1-215ENST00000547672 SLC26A4O43511 780 aa15.24■□□□□ 0.03
PTCH1-215ENST00000547672 MYL1P05976 194 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms