RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 PEX10O60683 326 aa15.99■□□□□ 0.15
PTCH1-213ENST00000546820 RXRAP19793 462 aa15.99■□□□□ 0.15
PTCH1-213ENST00000546820 PRMT2P55345 433 aa15.99■□□□□ 0.15
PTCH1-213ENST00000546820 TKFCQ3LXA3 575 aa15.99■□□□□ 0.15
PTCH1-213ENST00000546820 SNRNP48Q6IEG0 339 aaKnown RBP15.99■□□□□ 0.15
PTCH1-213ENST00000546820 CCDC174Q6PII3 467 aa15.99■□□□□ 0.15
PTCH1-213ENST00000546820 NCAPG2Q86XI2 1143 aa15.99■□□□□ 0.15
PTCH1-213ENST00000546820 RIOX1Q9H6W3 641 aa15.99■□□□□ 0.15
PTCH1-213ENST00000546820 RLFQ13129 1914 aa15.99■□□□□ 0.15
PTCH1-213ENST00000546820 ECM2O94769 699 aaPredicted RBP15.98■□□□□ 0.15
PTCH1-213ENST00000546820 ICAM1P05362 532 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 ERCC3P19447 782 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 PDIA3P30101 505 aaKnown RBP15.98■□□□□ 0.15
PTCH1-213ENST00000546820 AK2P54819 239 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 SNAP25P60880 206 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 PKN2Q16513 984 aaKnown RBP15.98■□□□□ 0.15
PTCH1-213ENST00000546820 PLEKHH3Q7Z736 793 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 RAB11FIP4Q86YS3 637 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 CHST13Q8NET6 341 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 RRP36Q96EU6 259 aaKnown RBP15.98■□□□□ 0.15
PTCH1-213ENST00000546820 TRIM47Q96LD4 638 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 SPZ1Q9BXG8 430 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 CPVLQ9H3G5 476 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 JMJD4Q9H9V9 463 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 FBXO40Q9UH90 709 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 CCPG1Q9ULG6 757 aa15.98■□□□□ 0.15
PTCH1-213ENST00000546820 PARP14Q460N5 1801 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 ST18O60284 1047 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 CDC37Q16543 378 aaPredicted RBP15.97■□□□□ 0.15
PTCH1-213ENST00000546820 CPLX2Q6PUV4 134 aaKnown RBP15.97■□□□□ 0.15
PTCH1-213ENST00000546820 TMTC3Q6ZXV5 915 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 GPR142Q7Z601 462 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 CTU1Q7Z7A3 348 aaKnown RBP15.97■□□□□ 0.15
PTCH1-213ENST00000546820 SRBD1Q8N5C6 995 aaKnown RBP15.97■□□□□ 0.15
PTCH1-213ENST00000546820 AGBL1Q96MI9 1066 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 KIF2CQ99661 725 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 PORCNQ9H237 461 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 SEC63Q9UGP8 760 aaKnown RBP15.97■□□□□ 0.15
PTCH1-213ENST00000546820 TRIM17Q9Y577 477 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 PCNTO95613 3336 aa15.97■□□□□ 0.15
PTCH1-213ENST00000546820 CASP8AP2Q9UKL3 1982 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 PNMA6FA0A0J9YX94 578 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 SLC15A5A6NIM6 579 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 ZBTB5O15062 677 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 FCER1AP12319 257 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 ALAS1P13196 640 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 ADD1P35611 737 aaKnown RBP15.96■□□□□ 0.15
PTCH1-213ENST00000546820 OTOP1Q7RTM1 612 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 FBXO11Q86XK2 927 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 ABRAQ8N0Z2 381 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 CCDC82Q8N4S0 544 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 TRERF1Q96PN7 1200 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 NUDT12Q9BQG2 462 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 LARP6Q9BRS8 491 aaKnown RBP15.96■□□□□ 0.15
PTCH1-213ENST00000546820 AMNQ9BXJ7 453 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 ARHGAP39Q9C0H5 1083 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 SLKQ9H2G2 1235 aaPredicted RBP15.96■□□□□ 0.15
PTCH1-213ENST00000546820 SLC5A4Q9NY91 659 aa15.96■□□□□ 0.15
PTCH1-213ENST00000546820 ZNF536O15090 1300 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 CPLX1O14810 134 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 CYTH3O43739 400 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 PLEKHA8P1O95397 391 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 PTPREP23469 700 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 CCT2P78371 535 aaKnown RBP15.95■□□□□ 0.14
PTCH1-213ENST00000546820 KCTD2Q14681 263 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 QRICH1Q2TAL8 776 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 NBPF11Q86T75 865 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 HOMER1Q86YM7 354 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 SOCS4Q8WXH5 440 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 MTMR8Q96EF0 704 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 ZSCAN31Q96LW9 406 aaPredicted RBP15.95■□□□□ 0.14
PTCH1-213ENST00000546820 PIGSQ96S52 555 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 MMP19Q99542 508 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 ACAD9Q9H845 621 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 SRRDQ9UH36 339 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 LIMCH1Q9UPQ0 1083 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 HPS5Q9UPZ3 1129 aa15.95■□□□□ 0.14
PTCH1-213ENST00000546820 CTGFP29279 349 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 CDC27P30260 824 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 AKAP17AQ02040 695 aaKnown RBP15.94■□□□□ 0.14
PTCH1-213ENST00000546820 STK3Q13188 491 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 DPP9Q86TI2 863 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 CMTR1Q8N1G2 835 aaKnown RBP15.94■□□□□ 0.14
PTCH1-213ENST00000546820 ANKRD35Q8N283 1001 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 RAET1EQ8TD07 263 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 DDX11Q96FC9 970 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 MAF1Q9H063 256 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 HOMER2Q9NSB8 354 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 RNF146Q9NTX7 359 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 FAM217BQ9NTX9 383 aaPredicted RBP15.94■□□□□ 0.14
PTCH1-213ENST00000546820 RBM27Q9P2N5 1060 aaKnown RBP15.94■□□□□ 0.14
PTCH1-213ENST00000546820 TPCN1Q9ULQ1 816 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 MRPL11Q9Y3B7 192 aaKnown RBP15.94■□□□□ 0.14
PTCH1-213ENST00000546820 RIPK3Q9Y572 518 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 PCDHA1Q9Y5I3 950 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 COL11A1P12107 1806 aaPredicted RBP15.94■□□□□ 0.14
PTCH1-213ENST00000546820 ABCB11O95342 1321 aa15.94■□□□□ 0.14
PTCH1-213ENST00000546820 NID2Q14112 1375 aa15.93■□□□□ 0.14
PTCH1-213ENST00000546820 PFKFB2O60825 505 aa15.93■□□□□ 0.14
PTCH1-213ENST00000546820 CDKL5O76039 1030 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms