RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 KLRF2D3W0D1 207 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 F5H6K3 240 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 DEXIO95424 95 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 TFRCP02786 760 aaKnown RBP11.01□□□□□ -0.65
YBX3-215ENST00000544504 PDHBP11177 359 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 PTPRAP18433 802 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 RXRAP19793 462 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 GJB2P29033 226 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 CDC27P30260 824 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 INPP5BP32019 993 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 SLC1A4P43007 532 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 FCGRTP55899 365 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 PRKCZQ05513 592 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 KLRC3Q07444 240 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 TRAF1Q13077 416 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 CCDC96Q2M329 555 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 ANKRD23Q86SG2 305 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 RAB11FIP4Q86YS3 637 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 SIAH1Q8IUQ4 282 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 CCDC144CPQ8IYA2 1237 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 ZNF280CQ8ND82 737 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 SPZ1Q9BXG8 430 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 VCPKMTQ9H867 229 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 FAM217BQ9NTX9 383 aaPredicted RBP11.01□□□□□ -0.65
YBX3-215ENST00000544504 FOXD4L1Q9NU39 408 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 ORC3Q9UBD5 711 aaPredicted RBP11.01□□□□□ -0.65
YBX3-215ENST00000544504 PDHXO00330 501 aa11□□□□□ -0.65
YBX3-215ENST00000544504 WDR46O15213 610 aaKnown RBP11□□□□□ -0.65
YBX3-215ENST00000544504 PRPF3O43395 683 aaKnown RBP11□□□□□ -0.65
YBX3-215ENST00000544504 RAD21O60216 631 aa11□□□□□ -0.65
YBX3-215ENST00000544504 JAG1P78504 1218 aa11□□□□□ -0.65
YBX3-215ENST00000544504 PPATQ06203 517 aa11□□□□□ -0.65
YBX3-215ENST00000544504 ZNF543Q08ER8 600 aa11□□□□□ -0.65
YBX3-215ENST00000544504 ST3GAL1Q11201 340 aa11□□□□□ -0.65
YBX3-215ENST00000544504 TRIM29Q14134 588 aa11□□□□□ -0.65
YBX3-215ENST00000544504 NTRK3Q16288 839 aa11□□□□□ -0.65
YBX3-215ENST00000544504 LARP1BQ659C4 914 aaKnown RBP11□□□□□ -0.65
YBX3-215ENST00000544504 USP17L2Q6R6M4 530 aa11□□□□□ -0.65
YBX3-215ENST00000544504 FAM160B2Q86V87 743 aa11□□□□□ -0.65
YBX3-215ENST00000544504 CLEC10AQ8IUN9 316 aa11□□□□□ -0.65
YBX3-215ENST00000544504 CHURC1Q8WUH1 139 aa11□□□□□ -0.65
YBX3-215ENST00000544504 ZKSCAN4Q969J2 545 aaPredicted RBP11□□□□□ -0.65
YBX3-215ENST00000544504 SLC26A6Q9BXS9 759 aa11□□□□□ -0.65
YBX3-215ENST00000544504 MAD2L2Q9UI95 211 aa11□□□□□ -0.65
YBX3-215ENST00000544504 ISY1Q9ULR0 285 aaKnown RBP11□□□□□ -0.65
YBX3-215ENST00000544504 ADGRA2Q96PE1 1338 aa11□□□□□ -0.65
YBX3-215ENST00000544504 hCG_1984214I3L0E3 225 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 ADCY3O60266 1144 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 PLA2G6O60733 806 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 CTDNEP1O95476 244 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 NDUFB10O96000 172 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 BMP3P12645 472 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 DDIT3P35638 169 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 BACE1P56817 501 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 NECAB2Q7Z6G3 386 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 TDHQ8IZJ6 230 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 ZNF713Q8N859 430 aaPredicted RBP10.99□□□□□ -0.65
YBX3-215ENST00000544504 ACER1Q8TDN7 264 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 PXYLP1Q8TE99 480 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 RRP36Q96EU6 259 aaKnown RBP10.99□□□□□ -0.65
YBX3-215ENST00000544504 DDX11Q96FC9 970 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 PAWRQ96IZ0 340 aaKnown RBP10.99□□□□□ -0.65
YBX3-215ENST00000544504 DEFB118Q96PH6 123 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 PAK6Q9NQU5 681 aaPredicted RBP10.99□□□□□ -0.65
YBX3-215ENST00000544504 TMOD4Q9NZQ9 345 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 SEC63Q9UGP8 760 aaKnown RBP10.99□□□□□ -0.65
YBX3-215ENST00000544504 PNMA2Q9UL42 364 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 MTMR7Q9Y216 660 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 ZHX2Q9Y6X8 837 aa10.99□□□□□ -0.65
YBX3-215ENST00000544504 A0A1W2PRG0 241 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 H3BQV1 296 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 CXCL11O14625 94 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 JAK2O60674 1132 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 PLEKHA8P1O95397 391 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 INHAP05111 366 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 FDX1P10109 184 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 STAT2P52630 851 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 FUT2Q10981 343 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 SPP2Q13103 211 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 IKQ13123 557 aaPredicted RBP10.98□□□□□ -0.65
YBX3-215ENST00000544504 SHROOM1Q2M3G4 852 aaPredicted RBP10.98□□□□□ -0.65
YBX3-215ENST00000544504 BTNL9Q6UXG8 535 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 C7orf61Q8IZ16 206 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 SRBD1Q8N5C6 995 aaKnown RBP10.98□□□□□ -0.65
YBX3-215ENST00000544504 CCDC12Q8WUD4 166 aaPredicted RBP10.98□□□□□ -0.65
YBX3-215ENST00000544504 C8orf76Q96K31 380 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 C12orf42Q96LP6 360 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 PARK7Q99497 189 aaKnown RBP10.98□□□□□ -0.65
YBX3-215ENST00000544504 ALG1Q9BT22 464 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 CRISPLD2Q9H0B8 497 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 RIOX1Q9H6W3 641 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 PRDM6Q9NQX0 595 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 FEM1BQ9UK73 627 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 ATP6V1DQ9Y5K8 247 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 CNTNAP5Q8WYK1 1306 aa10.98□□□□□ -0.65
YBX3-215ENST00000544504 STX6O43752 255 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 BCRP11274 1271 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 SYT1P21579 422 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 IRF5Q13568 498 aa10.97□□□□□ -0.65
YBX3-215ENST00000544504 MTMR2Q13614 643 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms