RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 RHOXF2Q9BQY4 288 aa15.41■□□□□ 0.06
VPS33A-208ENST00000543633 MKRN1Q9UHC7 482 aaKnown RBP15.41■□□□□ 0.06
VPS33A-208ENST00000543633 FEZ2Q9UHY8 353 aaPredicted RBP15.41■□□□□ 0.06
VPS33A-208ENST00000543633 A0A0G2JS52 829 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 KRT86O43790 486 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 SRGNP10124 158 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 MCM7P33993 719 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 CDK17Q00537 523 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 IQCEQ6IPM2 695 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 FAM114A1Q8IWE2 563 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 NOA1Q8NC60 698 aaKnown RBP15.4■□□□□ 0.06
VPS33A-208ENST00000543633 STAMQ92783 540 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 DHTKD1Q96HY7 919 aaPredicted RBP15.4■□□□□ 0.06
VPS33A-208ENST00000543633 CRNKL1Q9BZJ0 848 aaKnown RBP15.4■□□□□ 0.06
VPS33A-208ENST00000543633 QTRT2Q9H974 415 aaKnown RBP15.4■□□□□ 0.06
VPS33A-208ENST00000543633 MAGEC2Q9UBF1 373 aaPredicted RBP15.4■□□□□ 0.06
VPS33A-208ENST00000543633 PCDHA4Q9UN74 947 aa15.4■□□□□ 0.06
VPS33A-208ENST00000543633 hCG_1642624A0A1W2PR95 340 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 CDC25AP30304 524 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 GNAQP50148 359 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 CCDC178Q5BJE1 867 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 FIGNQ5HY92 759 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 FAN1Q9Y2M0 1017 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 GDAQ9Y2T3 454 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 SAR1BQ9Y6B6 198 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 COL4A1P02462 1669 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 COL5A3P25940 1745 aaPredicted RBP15.39■□□□□ 0.05
VPS33A-208ENST00000543633 A0A1W2PQJ5 194 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 EIF3CLB5ME19 914 aaKnown RBP15.39■□□□□ 0.05
VPS33A-208ENST00000543633 HOXA7P31268 230 aaPredicted RBP15.39■□□□□ 0.05
VPS33A-208ENST00000543633 HERVK_113P62684 666 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 COBLL1Q53SF7 1204 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 PTF1AQ7RTS3 328 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 ANKRD18AQ8IVF6 992 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 GIMAP8Q8ND71 665 aaPredicted RBP15.39■□□□□ 0.05
VPS33A-208ENST00000543633 ANKS1AQ92625 1134 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 CCDC47Q96A33 483 aaKnown RBP15.39■□□□□ 0.05
VPS33A-208ENST00000543633 PURBQ96QR8 312 aaKnown RBP15.39■□□□□ 0.05
VPS33A-208ENST00000543633 EIF3CQ99613 913 aaKnown RBP15.39■□□□□ 0.05
VPS33A-208ENST00000543633 CHP1Q99653 195 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 TSGA10Q9BZW7 698 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 TTYH3Q9C0H2 523 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 KBTBD4Q9NVX7 518 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 BSDC1Q9NW68 430 aaPredicted RBP15.39■□□□□ 0.05
VPS33A-208ENST00000543633 ZNF652Q9Y2D9 606 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 EP400Q96L91 3159 aa15.39■□□□□ 0.05
VPS33A-208ENST00000543633 NHSQ6T4R5 1651 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 LOC102724428A0A0B4J2F2 783 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 BICDL2A1A5D9 508 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 USP17L12C9JPN9 530 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 USP17L21D6R901 530 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 M0R2N6 131 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 RGL2O15211 777 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 KLRC4O43908 158 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 ABL1P00519 1130 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 SIK1P57059 783 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 DYNLL1P63167 89 aaKnown RBP15.38■□□□□ 0.05
VPS33A-208ENST00000543633 ZBED6P86452 979 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 SF3B3Q15393 1217 aaKnown RBP15.38■□□□□ 0.05
VPS33A-208ENST00000543633 TTI2Q6NXR4 508 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 DTHD1Q6ZMT9 781 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 SRLQ86TD4 932 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 AK8Q96MA6 479 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 ZNHIT6Q9NWK9 470 aaKnown RBP15.38■□□□□ 0.05
VPS33A-208ENST00000543633 GUCA1BQ9UMX6 200 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 IPO7O95373 1038 aaKnown RBP15.38■□□□□ 0.05
VPS33A-208ENST00000543633 CRKLP46109 303 aaKnown RBP15.38■□□□□ 0.05
VPS33A-208ENST00000543633 ITIH3Q06033 890 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 NAALADL2Q58DX5 795 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 CCDC122Q5T0U0 273 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 FAM182BQ5T319 152 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 NCAPH2Q6IBW4 605 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 WDR59Q6PJI9 974 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 SEPT12Q8IYM1 358 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 JAKMIP2Q96AA8 810 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 TRIM47Q96LD4 638 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 RASSF4Q9H2L5 321 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 EXOC1Q9NV70 894 aa15.38■□□□□ 0.05
VPS33A-208ENST00000543633 NIP7Q9Y221 180 aaKnown RBP eCLIP15.38■□□□□ 0.05
VPS33A-208ENST00000543633 SBF2Q86WG5 1849 aa15.37■□□□□ 0.05
VPS33A-208ENST00000543633 CYP2D7A0A087X1C5 515 aa15.37■□□□□ 0.05
VPS33A-208ENST00000543633 GYG1P46976 350 aa15.37■□□□□ 0.05
VPS33A-208ENST00000543633 GYS2P54840 703 aa15.37■□□□□ 0.05
VPS33A-208ENST00000543633 ZNF572Q7Z3I7 529 aaPredicted RBP15.37■□□□□ 0.05
VPS33A-208ENST00000543633 DGKHQ86XP1 1220 aa15.37■□□□□ 0.05
VPS33A-208ENST00000543633 GOLGA6L1Q8N7Z2 621 aa15.37■□□□□ 0.05
VPS33A-208ENST00000543633 CCDC102AQ96A19 550 aa15.37■□□□□ 0.05
VPS33A-208ENST00000543633 NSUN4Q96CB9 384 aaKnown RBP15.37■□□□□ 0.05
VPS33A-208ENST00000543633 DCP1AQ9NPI6 582 aaPredicted RBP15.37■□□□□ 0.05
VPS33A-208ENST00000543633 ROBO3Q96MS0 1386 aa15.37■□□□□ 0.05
VPS33A-208ENST00000543633 MYH14Q7Z406 1995 aaKnown RBP15.36■□□□□ 0.05
VPS33A-208ENST00000543633 LRRIQ3A6PVS8 624 aaPredicted RBP15.36■□□□□ 0.05
VPS33A-208ENST00000543633 SMIM22K7EJ46 135 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 ITPK1Q13572 414 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 FBXO33Q7Z6M2 555 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 KIAA1328Q86T90 577 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 ZNF384Q8TF68 577 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 SMARCC1Q92922 1105 aaPredicted RBP15.36■□□□□ 0.05
VPS33A-208ENST00000543633 PODXL2Q9NZ53 605 aa15.36■□□□□ 0.05
VPS33A-208ENST00000543633 BTAF1O14981 1849 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms