RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	DTNB	O60941	627 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	ANP32A	P39687	249 aa	Known RBP	11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	CCNA1	P78396	465 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	TRAF1	Q13077	416 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	TMEM132B	Q14DG7	1078 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	SLC35G1	Q2M3R5	365 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	USH1G	Q495M9	461 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	SNRNP48	Q6IEG0	339 aa	Known RBP	11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	NCAPG2	Q86XI2	1143 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	FBXO11	Q86XK2	927 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	AGBL1	Q96MI9	1066 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	AMN	Q9BXJ7	453 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	TEX13B	Q9BXU2	312 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	RANBP17	Q9H2T7	1088 aa	Known RBP	11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	R3HDML	Q9H3Y0	253 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	TXNRD2	Q9NNW7	524 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	BTBD7	Q9P203	1132 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	RBM27	Q9P2N5	1060 aa	Known RBP	11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	PNMA2	Q9UL42	364 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	CCPG1	Q9ULG6	757 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	ADAMTS5	Q9UNA0	930 aa		11.75	□□□□□ -0.53
CPSF7-221	ENST00000543545	GREB1L	Q9C091	1923 aa	Predicted RBP	11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	PTPDC1	A2A3K4	754 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	PRPF3	O43395	683 aa	Known RBP	11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	JAK2	O60674	1132 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	CNMD	O75829	334 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	FMNL1	O95466	1100 aa	Predicted RBP	11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	ICAM1	P05362	532 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	ALAS1	P13196	640 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	OAZ1	P54368	228 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	ERVK-9	P63128	1117 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	ERVK-24	P63145	666 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	FUT2	Q10981	343 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	NTRK3	Q16288	839 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545		Q3C1V9	767 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	C17orf99	Q6UX52	265 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	HEATR3	Q7Z4Q2	680 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	FAM184A	Q8NB25	1140 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	LLPH	Q9BRT6	129 aa	Known RBP	11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	RNF26	Q9BY78	433 aa	Predicted RBP	11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	SPATC1L	Q9H0A9	340 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	TSHZ2	Q9NRE2	1034 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	HOMER2	Q9NSB8	354 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	FOXD4L1	Q9NU39	408 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	ORC3	Q9UBD5	711 aa	Predicted RBP	11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	DAXX	Q9UER7	740 aa	Predicted RBP	11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	TSKS	Q9UJT2	592 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	SMC3	Q9UQE7	1217 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	PCDHA1	Q9Y5I3	950 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	NID2	Q14112	1375 aa		11.74	□□□□□ -0.53
CPSF7-221	ENST00000543545	DEXI	O95424	95 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	CTDNEP1	O95476	244 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	SLC25A27	O95847	323 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	MYH8	P13535	1937 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	ST3GAL1	Q11201	340 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	FAM110C	Q1W6H9	321 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	POTEE	Q6S8J3	1075 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	SPRYD3	Q8NCJ5	442 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	NSUN7	Q8NE18	718 aa	Known RBP	11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	REPS2	Q8NFH8	660 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	CNTNAP5	Q8WYK1	1306 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	WASF1	Q92558	559 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.73	□□□□□ -0.53	3e-7	■■■■□ 21.6
CPSF7-221	ENST00000543545	COA7	Q96BR5	231 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	MTMR8	Q96EF0	704 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	TRERF1	Q96PN7	1200 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	MOV10L1	Q9BXT6	1211 aa	Known RBP	11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	WBP1L	Q9NX94	342 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	SAGE1	Q9NXZ1	904 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	MORF4L1	Q9UBU8	362 aa		11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	ZNF214	Q9UL59	606 aa	Predicted RBP	11.73	□□□□□ -0.53
CPSF7-221	ENST00000543545	GPR25	O00155	361 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	BCR	P11274	1271 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	SCG2	P13521	617 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	TAL1	P17542	331 aa	Predicted RBP	11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	ERCC3	P19447	782 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	COPB2	P35606	906 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	FOSB	P53539	338 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	NAPA	P54920	295 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	HMGN5	P82970	282 aa	Known RBP	11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	SP3	Q02447	781 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	KIF22	Q14807	665 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	PFKFB3	Q16875	520 aa	Predicted RBP	11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	TKFC	Q3LXA3	575 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	RIOX2	Q8IUF8	465 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	ALG1	Q9BT22	464 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	EFCC1	Q9HA90	598 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	RNF146	Q9NTX7	359 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	MRPL11	Q9Y3B7	192 aa	Known RBP	11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	RBM19	Q9Y4C8	960 aa	Known RBP	11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	RIPK3	Q9Y572	518 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	ATAD5	Q96QE3	1844 aa		11.72	□□□□□ -0.53
CPSF7-221	ENST00000543545	ZNF536	O15090	1300 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	ABCB11	O95342	1321 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	ADGRA2	Q96PE1	1338 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	ATP2A1	O14983	1001 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	PPP1R11	O60927	126 aa	Predicted RBP	11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	XBP1	P17861	261 aa		11.71	□□□□□ -0.53
CPSF7-221	ENST00000543545	MAPK4	P31152	587 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms