RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 INTS13Q9NVM9 706 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 JAG2Q9Y219 1238 aa11.15□□□□□ -0.62
SS18-205ENST00000542420 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.14□□□□□ -0.63
SS18-205ENST00000542420 HLA-DOAP06340 250 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 OR52Z1P0C646 297 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 NAPAP54920 295 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 IL17AQ16552 155 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 GRIPAP1Q4V328 841 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 GPATCH4Q5T3I0 446 aaKnown RBP11.14□□□□□ -0.63
SS18-205ENST00000542420 APTXQ7Z2E3 356 aaKnown RBP11.14□□□□□ -0.63
SS18-205ENST00000542420 HEATR3Q7Z4Q2 680 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 NEK8Q86SG6 692 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 CEP95Q96GE4 821 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 DHX36Q9H2U1 1008 aaKnown RBP11.14□□□□□ -0.63
SS18-205ENST00000542420 KBTBD4Q9NVX7 518 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 SYNPO2Q9UMS6 1093 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 VGLL3A8MV65 326 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 H7C1D1 291 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 RPN1P04843 607 aaKnown RBP11.14□□□□□ -0.63
SS18-205ENST00000542420 PDHBP11177 359 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 STAT6P42226 847 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 TYW1BQ6NUM6 668 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 TMEM139Q8IV31 216 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 PDCL2Q8N4E4 241 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 ERO1AQ96HE7 468 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 MED15Q96RN5 788 aa11.14□□□□□ -0.63
SS18-205ENST00000542420 ADD3Q9UEY8 706 aaKnown RBP11.14□□□□□ -0.63
SS18-205ENST00000542420 SAP30BPQ9UHR5 308 aaKnown RBP11.14□□□□□ -0.63
SS18-205ENST00000542420 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.14□□□□□ -0.632e-6■■□□□ 14.5
SS18-205ENST00000542420 RHOBTB3O94955 611 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 TTLL1O95922 423 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 GTF2IP78347 998 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 AMPD3Q01432 767 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 PAK1Q13153 545 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 STIM1Q13586 685 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 RRAGBQ5VZM2 374 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 CC2D2BQ6DHV5 1058 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 CNNM4Q6P4Q7 775 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 PROM2Q8N271 834 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 SLC44A5Q8NCS7 719 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 GPKOWQ92917 476 aaPredicted RBP eCLIP11.13□□□□□ -0.63
SS18-205ENST00000542420 TEKT1Q969V4 418 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 ZDHHC15Q96MV8 337 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 LRRC27Q9C0I9 530 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 SERPINB13Q9UIV8 391 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 ADAMTSL1Q8N6G6 1762 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 SMCO2A6NFE2 343 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 TRIM37O94972 964 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 UBA7P41226 1012 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 AFMP43652 599 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 FXR2P51116 673 aaKnown RBP eCLIP11.13□□□□□ -0.63
SS18-205ENST00000542420 CBX1P83916 185 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 NOM1Q5C9Z4 860 aaKnown RBP11.13□□□□□ -0.63
SS18-205ENST00000542420 ZNF772Q68DY9 489 aaPredicted RBP11.13□□□□□ -0.63
SS18-205ENST00000542420 DPP8Q6V1X1 898 aaPredicted RBP11.13□□□□□ -0.63
SS18-205ENST00000542420 CNGA4Q8IV77 575 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 GRAMD1CQ8IYS0 662 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 IQCDQ96DY2 449 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 MTMR8Q96EF0 704 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 BAG1Q99933 345 aaPredicted RBP11.13□□□□□ -0.63
SS18-205ENST00000542420 RAB34Q9BZG1 259 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 STK17AQ9UEE5 414 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 PARP3Q9Y6F1 533 aa11.13□□□□□ -0.63
SS18-205ENST00000542420 AKR1B15C9JRZ8 316 aaPredicted RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 TPM1P09493 284 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 GCFC2P16383 781 aaKnown RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 EEF1GP26641 437 aaKnown RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 ETF1P62495 437 aaKnown RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 STRIP1Q5VSL9 837 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 REXO1Q8N1G1 1221 aaKnown RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 TC2NQ8N9U0 490 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 MKL1Q969V6 931 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 DHTKD1Q96HY7 919 aaPredicted RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 GPR101Q96P66 508 aaPredicted RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 C7orf25Q9BPX7 421 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 IDI2Q9BXS1 227 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 MYH7BA7E2Y1 1941 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 PNMA6FA0A0J9YX94 578 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 USP27XA6NNY8 438 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 VEGFAP15692 232 aaPredicted RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 CD44P16070 742 aaKnown RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 ZNF543Q08ER8 600 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 PDIA5Q14554 519 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 INF2Q27J81 1249 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 PPP4R3AQ6IN85 833 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 ADSSL1Q8N142 457 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 IGSF22Q8N9C0 903 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 THAP9Q9H5L6 903 aa11.12□□□□□ -0.63
SS18-205ENST00000542420 SAMSN1Q9NSI8 373 aaKnown RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 CGNQ9P2M7 1197 aaKnown RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 TTF2Q9UNY4 1162 aaKnown RBP11.12□□□□□ -0.63
SS18-205ENST00000542420 A0A1W2PQC6 194 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 TMEM232C9JQI7 657 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 SLU7O95391 586 aaKnown RBP11.11□□□□□ -0.63
SS18-205ENST00000542420 ADCY7P51828 1080 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 ZNF827Q17R98 1081 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 NAALADL2Q58DX5 795 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 TAF3Q5VWG9 929 aa11.11□□□□□ -0.63
SS18-205ENST00000542420 GIMAP8Q8ND71 665 aaPredicted RBP11.11□□□□□ -0.63
SS18-205ENST00000542420 DCAF4Q8WV16 495 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms