RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 DNAJB2P25686 324 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 GJA9P57773 515 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 PPIGQ13427 754 aaKnown RBP eCLIP18.38■□□□□ 0.53
RTN3-211ENST00000542238 GNASQ5JWF2 1037 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 MFSD5Q6N075 450 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 ARMCX2Q7L311 632 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 NACAP1Q9BZK3 213 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 TBX21Q9UL17 535 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 ISY1Q9ULR0 285 aaKnown RBP18.38■□□□□ 0.53
RTN3-211ENST00000542238 A0A0U1RQG5 324 aaPredicted RBP18.37■□□□□ 0.53
RTN3-211ENST00000542238 PATL2C9JE40 543 aaKnown RBP18.37■□□□□ 0.53
RTN3-211ENST00000542238 TLR3O15455 904 aaKnown RBP18.37■□□□□ 0.53
RTN3-211ENST00000542238 SLC3A2P08195 630 aaKnown RBP18.37■□□□□ 0.53
RTN3-211ENST00000542238 TSPY3P0CV98 308 aa18.37■□□□□ 0.53
RTN3-211ENST00000542238 TSPY8P0CW00 308 aa18.37■□□□□ 0.53
RTN3-211ENST00000542238 BMP3P12645 472 aa18.37■□□□□ 0.53
RTN3-211ENST00000542238 CDK7P50613 346 aa18.37■□□□□ 0.53
RTN3-211ENST00000542238 PDE4BQ07343 736 aa18.37■□□□□ 0.53
RTN3-211ENST00000542238 SLFN13Q68D06 897 aa18.37■□□□□ 0.53
RTN3-211ENST00000542238 LRRC47Q8N1G4 583 aaKnown RBP18.37■□□□□ 0.53
RTN3-211ENST00000542238 TMEM199Q8N511 208 aa18.37■□□□□ 0.53
RTN3-211ENST00000542238 SYMPKQ92797 1274 aaKnown RBP18.37■□□□□ 0.53
RTN3-211ENST00000542238 UPF3AQ9H1J1 476 aaKnown RBP18.37■□□□□ 0.53
RTN3-211ENST00000542238 EPB41L4AQ9HCS5 686 aaPredicted RBP18.37■□□□□ 0.53
RTN3-211ENST00000542238 HOMER2Q9NSB8 354 aa18.37■□□□□ 0.53
RTN3-211ENST00000542238 ARVCFO00192 962 aa18.36■□□□□ 0.53
RTN3-211ENST00000542238 GRIN2CQ14957 1233 aa18.36■□□□□ 0.53
RTN3-211ENST00000542238 EYSQ5T1H1 3165 aa18.36■□□□□ 0.53
RTN3-211ENST00000542238 CCDC144CPQ8IYA2 1237 aa18.36■□□□□ 0.53
RTN3-211ENST00000542238 IFNL3Q8IZI9 196 aa18.36■□□□□ 0.53
RTN3-211ENST00000542238 TIFAQ96CG3 184 aa18.36■□□□□ 0.53
RTN3-211ENST00000542238 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.36■□□□□ 0.53
RTN3-211ENST00000542238 ZNF576Q9H609 170 aa18.36■□□□□ 0.53
RTN3-211ENST00000542238 ACAD9Q9H845 621 aa18.36■□□□□ 0.53
RTN3-211ENST00000542238 TMEM232C9JQI7 657 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 M0R2C6 588 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 ADCY6O43306 1168 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 STAT2P52630 851 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 IKQ13123 557 aaPredicted RBP18.35■□□□□ 0.53
RTN3-211ENST00000542238 TSHZ3Q63HK5 1081 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 CCDC129Q6ZRS4 1044 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 NOL8Q76FK4 1167 aaKnown RBP18.35■□□□□ 0.53
RTN3-211ENST00000542238 NEDD1Q8NHV4 660 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 CHURC1Q8WUH1 139 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 FGD4Q96M96 766 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 DCTPP1Q9H773 170 aa18.35■□□□□ 0.53
RTN3-211ENST00000542238 PLIN4Q96Q06 1357 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 CDH23Q9H251 3354 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 IRX5P78411 483 aaPredicted RBP18.34■□□□□ 0.53
RTN3-211ENST00000542238 CNTN2Q02246 1040 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 TNFAIP2Q03169 654 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 PPP4R3BQ5MIZ7 849 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 C20orf194Q5TEA3 1177 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 FAM160B2Q86V87 743 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 PRUNE2Q8WUY3 3088 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 MYO9BQ13459 2157 aa18.34■□□□□ 0.53
RTN3-211ENST00000542238 ASB14A6NK59 587 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 CSF2RAP15509 400 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 SLC1A4P43007 532 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 TFAP4Q01664 338 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 TKFCQ3LXA3 575 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 TMEM240Q5SV17 173 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 PSRC1Q6PGN9 363 aaPredicted RBP18.33■□□□□ 0.52
RTN3-211ENST00000542238 FAM126BQ8IXS8 530 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 PPP1R12CQ9BZL4 782 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 NAPBQ9H115 298 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 RNF146Q9NTX7 359 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 TTC28Q96AY4 2481 aa18.33■□□□□ 0.52
RTN3-211ENST00000542238 ERC2O15083 957 aa18.32■□□□□ 0.52
RTN3-211ENST00000542238 CABYRO75952 493 aa18.32■□□□□ 0.52
RTN3-211ENST00000542238 C16orf59Q7L2K0 433 aa18.32■□□□□ 0.52
RTN3-211ENST00000542238 FAM133AQ8N9E0 248 aa18.32■□□□□ 0.52
RTN3-211ENST00000542238 STAG1Q8WVM7 1258 aa18.32■□□□□ 0.52
RTN3-211ENST00000542238 GMCL1Q96IK5 515 aa18.32■□□□□ 0.52
RTN3-211ENST00000542238 GAS2L1Q99501 681 aaPredicted RBP18.32■□□□□ 0.52
RTN3-211ENST00000542238 KATNBL1Q9H079 304 aa18.32■□□□□ 0.52
RTN3-211ENST00000542238 A1CFQ9NQ94 594 aaKnown RBP18.32■□□□□ 0.52
RTN3-211ENST00000542238 VCANP13611 3396 aa18.32■□□□□ 0.52
RTN3-211ENST00000542238 TTC41PQ6P2S7 1318 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 ZEB2O60315 1214 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 NKX3-2P78367 333 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 BEX3Q00994 111 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 PPARAQ07869 468 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 ZNF365Q70YC5 407 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 AGBL1Q96MI9 1066 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 TRERF1Q96PN7 1200 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 FSD1Q9BTV5 496 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 PBX4Q9BYU1 374 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 AP5M1Q9H0R1 490 aa18.31■□□□□ 0.52
RTN3-211ENST00000542238 MTIF3Q9H2K0 278 aaKnown RBP18.31■□□□□ 0.52
RTN3-211ENST00000542238 CTAGE5O15320 804 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 CD4P01730 458 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 ACRP10323 421 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 ALAS1P13196 640 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 MCCP23508 829 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 RASIP1Q5U651 963 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 CXCL17Q6UXB2 119 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 TLK2Q86UE8 772 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 CHMP4CQ96CF2 233 aa18.3■□□□□ 0.52
RTN3-211ENST00000542238 SEC62Q99442 399 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms