RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	ADGRF4	Q8IZF3	695 aa		10.84	□□□□□ -0.67
DDX55-208	ENST00000541259	SMARCC2	Q8TAQ2	1214 aa		10.84	□□□□□ -0.67
DDX55-208	ENST00000541259	BRI3BP	Q8WY22	251 aa		10.84	□□□□□ -0.67
DDX55-208	ENST00000541259	ZIC5	Q96T25	663 aa		10.84	□□□□□ -0.67
DDX55-208	ENST00000541259	LLPH	Q9BRT6	129 aa	Known RBP	10.84	□□□□□ -0.67
DDX55-208	ENST00000541259	SLC26A6	Q9BXS9	759 aa		10.84	□□□□□ -0.67
DDX55-208	ENST00000541259	TANGO6	Q9C0B7	1094 aa		10.84	□□□□□ -0.67
DDX55-208	ENST00000541259	JMJD4	Q9H9V9	463 aa		10.84	□□□□□ -0.67
DDX55-208	ENST00000541259		V9GY48	417 aa	Predicted RBP	10.84	□□□□□ -0.67
DDX55-208	ENST00000541259	CCL15-CCL14	A0A0B4J2E2	113 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	DHX16	O60231	1041 aa	Known RBP	10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	FMNL1	O95466	1100 aa	Predicted RBP	10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	GJB2	P29033	226 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	GTF2A2	P52657	109 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	SSRP1	Q08945	709 aa	Known RBP	10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	IK	Q13123	557 aa	Predicted RBP	10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	GRM1	Q13255	1194 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	CCL15	Q16663	113 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	SYDE2	Q5VT97	1194 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	PLPP6	Q8IY26	295 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	PROCA1	Q8NCQ7	364 aa	Predicted RBP	10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	KIFC2	Q96AC6	838 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	INTS4	Q96HW7	963 aa	Known RBP	10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	HHIPL1	Q96JK4	782 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	AIFM3	Q96NN9	605 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	PIGS	Q96S52	555 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	PTPN18	Q99952	460 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	LZTS2	Q9BRK4	669 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	SPZ1	Q9BXG8	430 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	RIOX1	Q9H6W3	641 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	ORC3	Q9UBD5	711 aa	Predicted RBP	10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	FEM1B	Q9UK73	627 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	PRR12	Q9ULL5	1215 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	SMC3	Q9UQE7	1217 aa		10.83	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L15	C9J2P7	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	BTBD19	C9JJ37	291 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L13	C9JLJ4	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L11	C9JVI0	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L18	D6R9N7	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L22	D6RA61	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L17	D6RBQ6	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L19	D6RCP7	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L20	D6RJB6	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	PRPF3	O43395	683 aa	Known RBP	10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	PLA2G6	O60733	806 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	FLOT1	O75955	427 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	CDKL5	O76039	1030 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	HSP90AA1	P07900	732 aa	Known RBP	10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	CETP	P11597	493 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	SMARCA1	P28370	1054 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	STAT2	P52630	851 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	FOSB	P53539	338 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	USP17L24	Q0WX57	530 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	PKN1	Q16512	942 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	DEFB115	Q30KQ5	88 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	CPLX2	Q6PUV4	134 aa	Known RBP	10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	POTEE	Q6S8J3	1075 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	FASTKD5	Q7L8L6	764 aa	Known RBP	10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	FAM160B2	Q86V87	743 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	HOMER1	Q86YM7	354 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	CHURC1	Q8WUH1	139 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	CCDC102A	Q96A19	550 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	MTMR8	Q96EF0	704 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	SLF1	Q9BQI6	1058 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	AGTPBP1	Q9UPW5	1226 aa		10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	ZNFX1	Q9P2E3	1918 aa	Known RBP	10.82	□□□□□ -0.68
DDX55-208	ENST00000541259	TESPA1	A2RU30	521 aa	Predicted RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	RASSF10	A6NK89	507 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	PEX10	O60683	326 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	PPP1R11	O60927	126 aa	Predicted RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	AOC2	O75106	756 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	TAL1	P17542	331 aa	Predicted RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	HOXA7	P31268	230 aa	Predicted RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	QRICH1	Q2TAL8	776 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	FAM43A	Q8N2R8	423 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	PRPF38A	Q8NAV1	312 aa	Known RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	SHISA4	Q96DD7	197 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	ATG4C	Q96DT6	458 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	P2RX7	Q99572	595 aa	Known RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	RNF26	Q9BY78	433 aa	Predicted RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	ASCC2	Q9H1I8	757 aa	Predicted RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	GJB4	Q9NTQ9	266 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	DAXX	Q9UER7	740 aa	Predicted RBP	10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	PPP1R9A	Q9ULJ8	1098 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	STK36	Q9NRP7	1315 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259		A0A0G2JMZ2	1700 aa		10.81	□□□□□ -0.68
DDX55-208	ENST00000541259	MANSC4	A6NHS7	340 aa	Predicted RBP	10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	PDHX	O00330	501 aa		10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	IGF2BP3	O00425	579 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	AKAP17A	Q02040	695 aa	Known RBP	10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	KIF23	Q02241	960 aa	Predicted RBP	10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	CAMK2B	Q13554	666 aa		10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	COG2	Q14746	738 aa		10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	CDC37	Q16543	378 aa	Predicted RBP	10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	PFKFB3	Q16875	520 aa	Predicted RBP	10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	OTUD7B	Q6GQQ9	843 aa		10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	CCDC174	Q6PII3	467 aa		10.8	□□□□□ -0.68
DDX55-208	ENST00000541259	TMEM92	Q6UXU6	159 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms