RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 FSCN1Q16658 493 aaKnown RBP11.18□□□□□ -0.62
USP28-205ENST00000537706 MRPL38Q96DV4 380 aaKnown RBP11.18□□□□□ -0.62
USP28-205ENST00000537706 RAD9AQ99638 391 aa11.18□□□□□ -0.62
USP28-205ENST00000537706 USP44Q9H0E7 712 aa11.18□□□□□ -0.62
USP28-205ENST00000537706 ALDH8A1Q9H2A2 487 aaPredicted RBP11.18□□□□□ -0.62
USP28-205ENST00000537706 DIEXFQ68CQ4 756 aaKnown RBP11.17□□□□□ -0.62
USP28-205ENST00000537706 SMCHD1A6NHR9 2005 aa11.17□□□□□ -0.62
USP28-205ENST00000537706 SIPA1L1O43166 1804 aa11.17□□□□□ -0.62
USP28-205ENST00000537706 POLR3DP05423 398 aaPredicted RBP11.17□□□□□ -0.62
USP28-205ENST00000537706 UBTFL1P0CB47 393 aaPredicted RBP11.17□□□□□ -0.62
USP28-205ENST00000537706 ARID4AP29374 1257 aaPredicted RBP11.17□□□□□ -0.62
USP28-205ENST00000537706 TMEM179Q6ZVK1 233 aa11.17□□□□□ -0.62
USP28-205ENST00000537706 TLK2Q86UE8 772 aa11.17□□□□□ -0.62
USP28-205ENST00000537706 CCDC155Q8N6L0 562 aa11.17□□□□□ -0.62
USP28-205ENST00000537706 VCPKMTQ9H867 229 aa11.17□□□□□ -0.62
USP28-205ENST00000537706 SOWAHBA6NEL2 793 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 PRR23AA6NEV1 266 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 PITPNM1O00562 1244 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 KDM4AO75164 1064 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 CYP2C9P11712 490 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 MCAMP43121 646 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 MCTP2Q6DN12 878 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 PI16Q6UXB8 463 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 ARMCX2Q7L311 632 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 WDR63Q8IWG1 891 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 SPICE1Q8N0Z3 855 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 SAMD11Q96NU1 681 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 FSD1Q9BTV5 496 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 COPRSQ9NQ92 184 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 CLDND1Q9NY35 253 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 PTPRCP08575 1304 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 DNAH12Q6ZR08 3092 aa11.16□□□□□ -0.62
USP28-205ENST00000537706 A0A1W2PRG0 241 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 LCHNA4D1U4 455 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 VWA5AO00534 786 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 EFCAB14O75071 495 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 GUCY1A2P33402 732 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 SMAD2Q15796 467 aaKnown RBP11.15□□□□□ -0.62
USP28-205ENST00000537706 LRRFIP1Q32MZ4 808 aaKnown RBP11.15□□□□□ -0.62
USP28-205ENST00000537706 ASCL5Q7RTU5 278 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 DGLUCYQ7Z3D6 616 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 BANK1Q8NDB2 785 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 VWCEQ96DN2 955 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 TEX13BQ9BXU2 312 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 GPHNQ9NQX3 736 aaPredicted RBP11.15□□□□□ -0.62
USP28-205ENST00000537706 POLR3EQ9NVU0 708 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 FBXO40Q9UH90 709 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 COL4A4P53420 1690 aaPredicted RBP11.15□□□□□ -0.62
USP28-205ENST00000537706 STXBP3O00186 592 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 CTAGE5O15320 804 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 DYNC1LI2O43237 492 aaPredicted RBP11.15□□□□□ -0.62
USP28-205ENST00000537706 IQCF3P0C7M6 154 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 AVPR2P30518 371 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 SHMT1P34896 483 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 PSMC6P62333 389 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 ZXDAP98168 799 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 ANKRD35Q8N283 1001 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 NSUN3Q9H649 340 aaKnown RBP11.15□□□□□ -0.62
USP28-205ENST00000537706 PPP1R9AQ9ULJ8 1098 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 ADAMTS5Q9UNA0 930 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 PA2G4Q9UQ80 394 aaKnown RBP11.15□□□□□ -0.62
USP28-205ENST00000537706 NOD1Q9Y239 953 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 Q9Y3F1 56 aa11.15□□□□□ -0.62
USP28-205ENST00000537706 GRIN2DO15399 1336 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 LINC01553A4QN01 128 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 H0Y858 1186 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 ADCY6O43306 1168 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 PARNO95453 639 aaKnown RBP11.14□□□□□ -0.63
USP28-205ENST00000537706 CYP7A1P22680 504 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 WDR5P61964 334 aaKnown RBP11.14□□□□□ -0.63
USP28-205ENST00000537706 TFCP2Q12800 502 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 FAM47CQ5HY64 1035 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 SNRNP48Q6IEG0 339 aaKnown RBP11.14□□□□□ -0.63
USP28-205ENST00000537706 SPRED2Q7Z698 418 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 NKD2Q969F2 451 aaPredicted RBP11.14□□□□□ -0.63
USP28-205ENST00000537706 GOPCQ9HD26 462 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 TLR9Q9NR96 1032 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 TMX2Q9Y320 296 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 ZNF318Q5VUA4 2279 aa11.14□□□□□ -0.63
USP28-205ENST00000537706 DNAJC25-GNG10A0A024R161 153 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 SLC4A3P48751 1232 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 DYNLL1P63167 89 aaKnown RBP11.13□□□□□ -0.63
USP28-205ENST00000537706 ICA1Q05084 483 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 SIGLEC14Q08ET2 396 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 SMAD4Q13485 552 aaKnown RBP11.13□□□□□ -0.63
USP28-205ENST00000537706 TCEAL5Q5H9L2 206 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 TTC39AQ5SRH9 613 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 TRMT13Q9NUP7 481 aaKnown RBP11.13□□□□□ -0.63
USP28-205ENST00000537706 ZDBF2Q9HCK1 2354 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 ASB14A6NK59 587 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 GJB5O95377 273 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 NBL1P41271 181 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 BRDTQ58F21 947 aaPredicted RBP11.13□□□□□ -0.63
USP28-205ENST00000537706 CNKSR3Q6P9H4 555 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 RPAINQ86UA6 219 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 ADSSL1Q8N142 457 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 ZNF214Q9UL59 606 aaPredicted RBP11.13□□□□□ -0.63
USP28-205ENST00000537706 INSL6Q9Y581 213 aa11.13□□□□□ -0.63
USP28-205ENST00000537706 ABHD14A-ACY1A0A1B0GW23 586 aa11.12□□□□□ -0.63
USP28-205ENST00000537706 GALR2O43603 387 aaPredicted RBP11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms