RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 PRSS12P56730 875 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 CCSAPQ6IQ19 270 aaPredicted RBP7.97□□□□□ -1.13
CD44-237ENST00000534082 FOXP4Q8IVH2 680 aaPredicted RBP7.97□□□□□ -1.13
CD44-237ENST00000534082 MAPKAPK5Q8IW41 473 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 PRSS33Q8NF86 280 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 NSUN4Q96CB9 384 aaKnown RBP7.97□□□□□ -1.13
CD44-237ENST00000534082 TINF2Q9BSI4 451 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 SIL1Q9H173 461 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 HIPK3Q9H422 1215 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 MROH8Q9H579 483 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 DMDP11532 3685 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 FLT1P17948 1338 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 ZFHX2Q9C0A1 2572 aaPredicted RBP7.97□□□□□ -1.13
CD44-237ENST00000534082 TRIOO75962 3097 aa7.97□□□□□ -1.13
CD44-237ENST00000534082 CD4P01730 458 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 ASGR1P07306 291 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 FCER1AP12319 257 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 CST5P28325 142 aaPredicted RBP7.96□□□□□ -1.14
CD44-237ENST00000534082 CCL23P55773 120 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 TAP1Q03518 808 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 PLS1Q14651 629 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 RAB3GAP1Q15042 981 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 LEXMQ3ZCV2 418 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 ACER1Q8TDN7 264 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 VTI1AQ96AJ9 217 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 MFSD14AQ96MC6 490 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 TANGO6Q9C0B7 1094 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 WNT8AQ9H1J5 351 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.96□□□□□ -1.14
CD44-237ENST00000534082 CEP126Q9P2H0 1117 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 PALD1Q9ULE6 856 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 CNPY2Q9Y2B0 182 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 SMCHD1A6NHR9 2005 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 ZNF536O15090 1300 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 IL16Q14005 1332 aa7.96□□□□□ -1.14
CD44-237ENST00000534082 LPXNO60711 386 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 CIAO1O76071 339 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 HLA-DOAP06340 250 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 PGK2P07205 417 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 C6orf222P0C671 652 aaPredicted RBP7.95□□□□□ -1.14
CD44-237ENST00000534082 KCNA5P22460 613 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 MLLT3P42568 568 aaPredicted RBP7.95□□□□□ -1.14
CD44-237ENST00000534082 COG2Q14746 738 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 PTCRAQ6ISU1 281 aaPredicted RBP7.95□□□□□ -1.14
CD44-237ENST00000534082 ATF7IPQ6VMQ6 1270 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 SPRED2Q7Z698 418 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 WWC1Q8IX03 1113 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 MB21D1Q8N884 522 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 PCSK9Q8NBP7 692 aaKnown RBP7.95□□□□□ -1.14
CD44-237ENST00000534082 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.95□□□□□ -1.14
CD44-237ENST00000534082 GDPD5Q8WTR4 605 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 TGFBRAP1Q8WUH2 860 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 MMP19Q99542 508 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 NOL10Q9BSC4 688 aaKnown RBP7.95□□□□□ -1.14
CD44-237ENST00000534082 NOC4LQ9BVI4 516 aaKnown RBP7.95□□□□□ -1.14
CD44-237ENST00000534082 HOXC10Q9NYD6 342 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 RAI14Q9P0K7 980 aa7.95□□□□□ -1.14
CD44-237ENST00000534082 SAP30BPQ9UHR5 308 aaKnown RBP7.95□□□□□ -1.14
CD44-237ENST00000534082 DUSP11O75319 330 aaKnown RBP7.94□□□□□ -1.14
CD44-237ENST00000534082 PLCB2Q00722 1185 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 EXOSC9Q06265 439 aaKnown RBP7.94□□□□□ -1.14
CD44-237ENST00000534082 TTLL4Q14679 1199 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 CCDC27Q2M243 656 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 ZNF792Q3KQV3 632 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 PI16Q6UXB8 463 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 TBC1D9Q6ZT07 1266 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 RPUSD2Q8IZ73 545 aaKnown RBP7.94□□□□□ -1.14
CD44-237ENST00000534082 VWCEQ96DN2 955 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 SCLYQ96I15 445 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 AATFQ9NY61 560 aaKnown RBP eCLIP7.94□□□□□ -1.14
CD44-237ENST00000534082 ZHX1Q9UKY1 873 aaPredicted RBP7.94□□□□□ -1.14
CD44-237ENST00000534082 FAM184BQ9ULE4 1060 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 CACNA1BQ00975 2339 aa7.94□□□□□ -1.14
CD44-237ENST00000534082 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP7.93□□□□□ -1.14
CD44-237ENST00000534082 BAG3O95817 575 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 PFKMP08237 780 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 IL15P40933 162 aaPredicted RBP7.93□□□□□ -1.14
CD44-237ENST00000534082 ZP2Q05996 745 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 KCTD2Q14681 263 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 MVPQ14764 893 aaKnown RBP7.93□□□□□ -1.14
CD44-237ENST00000534082 TATDN1Q6P1N9 297 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 ERMP1Q7Z2K6 904 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 SPATA5Q8NB90 893 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 ATG4CQ96DT6 458 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 SLC9A7Q96T83 725 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 UPF3AQ9H1J1 476 aaKnown RBP7.93□□□□□ -1.14
CD44-237ENST00000534082 SPC25Q9HBM1 224 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 FAM86C1Q9NVL1 165 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 LMCD1Q9NZU5 365 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 HMG20BQ9P0W2 317 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 DIS3Q9Y2L1 958 aaKnown RBP7.93□□□□□ -1.14
CD44-237ENST00000534082 FOCADQ5VW36 1801 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 CACNA1HO95180 2353 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 CDK5RAP2Q96SN8 1893 aa7.93□□□□□ -1.14
CD44-237ENST00000534082 EPG5Q9HCE0 2579 aa7.92□□□□□ -1.14
CD44-237ENST00000534082 C3orf80F5H4A9 247 aa7.92□□□□□ -1.14
CD44-237ENST00000534082 ADCY6O43306 1168 aa7.92□□□□□ -1.14
CD44-237ENST00000534082 RNF40O75150 1001 aa7.92□□□□□ -1.14
CD44-237ENST00000534082 FLOT1O75955 427 aa7.92□□□□□ -1.14
CD44-237ENST00000534082 SLC25A27O95847 323 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms