RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 CCDC82Q8N4S0 544 aa13.05□□□□□ -0.32
TRAPPC4-211ENST00000533012 MOV10L1Q9BXT6 1211 aaKnown RBP13.05□□□□□ -0.32
TRAPPC4-211ENST00000533012 TEX13BQ9BXU2 312 aa13.05□□□□□ -0.32
TRAPPC4-211ENST00000533012 SLKQ9H2G2 1235 aaPredicted RBP13.05□□□□□ -0.32
TRAPPC4-211ENST00000533012 ZNF214Q9UL59 606 aaPredicted RBP13.05□□□□□ -0.32
TRAPPC4-211ENST00000533012 TPCN1Q9ULQ1 816 aa13.05□□□□□ -0.32
TRAPPC4-211ENST00000533012 LIMCH1Q9UPQ0 1083 aa13.05□□□□□ -0.32
TRAPPC4-211ENST00000533012 HPS5Q9UPZ3 1129 aa13.05□□□□□ -0.32
TRAPPC4-211ENST00000533012 ECM2O94769 699 aaPredicted RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 PLEKHA8P1O95397 391 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 ICAM1P05362 532 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 HOXD10P28358 340 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 CDC27P30260 824 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 MAPK4P31152 587 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 COPB2P35606 906 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 PSMC4P43686 418 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 TRAF1Q13077 416 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 STK3Q13188 491 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 CDC37Q16543 378 aaPredicted RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 WDR78Q5VTH9 848 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 SNRNP48Q6IEG0 339 aaKnown RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 TMTC3Q6ZXV5 915 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 NOL8Q76FK4 1167 aaKnown RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 CMTR1Q8N1G2 835 aaKnown RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 SRBD1Q8N5C6 995 aaKnown RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 SHCBP1Q8NEM2 672 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 RRP36Q96EU6 259 aaKnown RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 SPZ1Q9BXG8 430 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 MROH8Q9H579 483 aa13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 FAM217BQ9NTX9 383 aaPredicted RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 RBM19Q9Y4C8 960 aaKnown RBP13.04□□□□□ -0.32
TRAPPC4-211ENST00000533012 PNMA6FA0A0J9YX94 578 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 TNPO2O14787 897 aaKnown RBP13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 CPLX1O14810 134 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 ZBTB5O15062 677 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 CYTH3O43739 400 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 PFKFB2O60825 505 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 GNRH1P01148 92 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 ERCC3P19447 782 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 MCM2P49736 904 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 TKFCQ3LXA3 575 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 CPLX2Q6PUV4 134 aaKnown RBP13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 HOMER1Q86YM7 354 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 CD99L2Q8TCZ2 262 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 COA7Q96BR5 231 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 MTMR8Q96EF0 704 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 ZSCAN31Q96LW9 406 aaPredicted RBP13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 AGBL1Q96MI9 1066 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 PIGSQ96S52 555 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 PORCNQ9H237 461 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 EFCC1Q9HA90 598 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 PRDM10Q9NQV6 1147 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 SEC63Q9UGP8 760 aaKnown RBP13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 CCPG1Q9ULG6 757 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 RIPK3Q9Y572 518 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 ZNF536O15090 1300 aa13.03□□□□□ -0.32
TRAPPC4-211ENST00000533012 STRNO43815 780 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 ALAS1P13196 640 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 AKAP17AQ02040 695 aaKnown RBP13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 ME3Q16798 604 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 SLC35G1Q2M3R5 365 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 QRICH1Q2TAL8 776 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 PLEKHH3Q7Z736 793 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 FBXO11Q86XK2 927 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 CHST13Q8NET6 341 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 PIBF1Q8WXW3 757 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 TRERF1Q96PN7 1200 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 AMNQ9BXJ7 453 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 NCOA5Q9HCD5 579 aaKnown RBP13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 FBXO40Q9UH90 709 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 IVNS1ABPQ9Y6Y0 642 aa13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 V9GY48 417 aaPredicted RBP13.02□□□□□ -0.33
TRAPPC4-211ENST00000533012 FCER1AP12319 257 aa13.01□□□□□ -0.33
TRAPPC4-211ENST00000533012 SCRN1Q12765 414 aa13.01□□□□□ -0.33
TRAPPC4-211ENST00000533012 GPR142Q7Z601 462 aa13.01□□□□□ -0.33
TRAPPC4-211ENST00000533012 TRIM47Q96LD4 638 aa13.01□□□□□ -0.33
TRAPPC4-211ENST00000533012 ARHGAP39Q9C0H5 1083 aa13.01□□□□□ -0.33
TRAPPC4-211ENST00000533012 HOMER2Q9NSB8 354 aa13.01□□□□□ -0.33
TRAPPC4-211ENST00000533012 TRIM17Q9Y577 477 aa13.01□□□□□ -0.33
TRAPPC4-211ENST00000533012 NID2Q14112 1375 aa13.01□□□□□ -0.33
TRAPPC4-211ENST00000533012 CDKL5O76039 1030 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 IFNAR1P17181 557 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 PTPREP23469 700 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 CTGFP29279 349 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 FUT2Q10981 343 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 KCTD2Q14681 263 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 NTRK3Q16288 839 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 USH1GQ495M9 461 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 TRIM22Q8IYM9 498 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 NECAB1Q8N987 351 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 NUDT12Q9BQG2 462 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 ACAD9Q9H845 621 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 SH2B1Q9NRF2 756 aaPredicted RBP13□□□□□ -0.33
TRAPPC4-211ENST00000533012 RNF146Q9NTX7 359 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 RBM27Q9P2N5 1060 aaKnown RBP13□□□□□ -0.33
TRAPPC4-211ENST00000533012 MRPL11Q9Y3B7 192 aaKnown RBP13□□□□□ -0.33
TRAPPC4-211ENST00000533012 PCDHA1Q9Y5I3 950 aa13□□□□□ -0.33
TRAPPC4-211ENST00000533012 ABCB11O95342 1321 aa12.99□□□□□ -0.33
TRAPPC4-211ENST00000533012 hCG_1642624A0A1W2PR95 340 aa12.99□□□□□ -0.33
TRAPPC4-211ENST00000533012 SLC15A5A6NIM6 579 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms