RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 USP6NLQ92738 828 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 TBC1D32Q96NH3 1257 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 LZTS2Q9BRK4 669 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 SPZ1Q9BXG8 430 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 UBA5Q9GZZ9 404 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 CPVLQ9H3G5 476 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 JMJD4Q9H9V9 463 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 FAM217BQ9NTX9 383 aaPredicted RBP16.85■□□□□ 0.29
CPSF1-206ENST00000531480 PDRG1Q9NUG6 133 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 PNMA2Q9UL42 364 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 HPS5Q9UPZ3 1129 aa16.85■□□□□ 0.29
CPSF1-206ENST00000531480 KLF18A0A0U1RQI7 1052 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 ZBTB43O43298 467 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 STRNO43815 780 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 ERCC3P19447 782 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 GNAQP50148 359 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 APOBRQ0VD83 1088 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 MORN1Q5T089 497 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 SNRNP48Q6IEG0 339 aaKnown RBP16.84■□□□□ 0.29
CPSF1-206ENST00000531480 PLEKHH3Q7Z736 793 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 ABRAQ8N0Z2 381 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 NUP133Q8WUM0 1156 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 RAVER2Q9HCJ3 691 aaKnown RBP16.84■□□□□ 0.29
CPSF1-206ENST00000531480 SRRDQ9UH36 339 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 RIPK3Q9Y572 518 aa16.84■□□□□ 0.29
CPSF1-206ENST00000531480 TNPO2O14787 897 aaKnown RBP16.83■□□□□ 0.28
CPSF1-206ENST00000531480 FMNL1O95466 1100 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-206ENST00000531480 HOXD10P28358 340 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 SOX10P56693 466 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 FUT2Q10981 343 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 IRF5Q13568 498 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 GRB14Q14449 540 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 TKFCQ3LXA3 575 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 SAMD1Q6SPF0 538 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-206ENST00000531480 SYNE3Q6ZMZ3 975 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 TMTC3Q6ZXV5 915 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 MICU3Q86XE3 530 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 CHST13Q8NET6 341 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 COA7Q96BR5 231 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 ZNF274Q96GC6 653 aaPredicted RBP16.83■□□□□ 0.28
CPSF1-206ENST00000531480 AGBL1Q96MI9 1066 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 UPF2Q9HAU5 1272 aaKnown RBP16.83■□□□□ 0.28
CPSF1-206ENST00000531480 RBM28Q9NW13 759 aaKnown RBP16.83■□□□□ 0.28
CPSF1-206ENST00000531480 ISY1Q9ULR0 285 aaKnown RBP16.83■□□□□ 0.28
CPSF1-206ENST00000531480 PTPN22Q9Y2R2 807 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 TRIM17Q9Y577 477 aa16.83■□□□□ 0.28
CPSF1-206ENST00000531480 SLC15A5A6NIM6 579 aa16.82■□□□□ 0.28
CPSF1-206ENST00000531480 RXRAP19793 462 aa16.82■□□□□ 0.28
CPSF1-206ENST00000531480 PTPREP23469 700 aa16.82■□□□□ 0.28
CPSF1-206ENST00000531480 PDIA3P30101 505 aaKnown RBP16.82■□□□□ 0.28
CPSF1-206ENST00000531480 FGD1P98174 961 aa16.82■□□□□ 0.28
CPSF1-206ENST00000531480 PLS1Q14651 629 aa16.82■□□□□ 0.28
CPSF1-206ENST00000531480 CDC37Q16543 378 aaPredicted RBP16.82■□□□□ 0.28
CPSF1-206ENST00000531480 SRBD1Q8N5C6 995 aaKnown RBP16.82■□□□□ 0.28
CPSF1-206ENST00000531480 MAF1Q9H063 256 aa16.82■□□□□ 0.28
CPSF1-206ENST00000531480 PLXNA1Q9UIW2 1896 aa16.82■□□□□ 0.28
CPSF1-206ENST00000531480 RBBP6Q7Z6E9 1792 aaKnown RBP16.82■□□□□ 0.28
CPSF1-206ENST00000531480 LCTP09848 1927 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 ZBTB5O15062 677 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 PLEKHA8P1O95397 391 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 IGHA2P01877 340 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 HOXC6P09630 235 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 XRCC5P13010 732 aaKnown RBP16.81■□□□□ 0.28
CPSF1-206ENST00000531480 SNAP25P60880 206 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 PRKCZQ05513 592 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 ANKRD1Q15327 319 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 QRICH1Q2TAL8 776 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 FBXO46Q6PJ61 603 aaPredicted RBP16.81■□□□□ 0.28
CPSF1-206ENST00000531480 CPXCR1Q8N123 301 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 SOCS4Q8WXH5 440 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 FBXO40Q9UH90 709 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 GABRQQ9UN88 632 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 CENPFP49454 3210 aa16.81■□□□□ 0.28
CPSF1-206ENST00000531480 GOLGA8AA7E2F4 631 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 GOLGA8BA8MQT2 603 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 PPP1R11O60927 126 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-206ENST00000531480 CDC27P30260 824 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 FLT3LGP49771 235 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 METAP2P50579 478 aaKnown RBP eCLIP16.8■□□□□ 0.288e-13■□□□□ 10.8
CPSF1-206ENST00000531480 NEK4P51957 841 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 AK2P54819 239 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 NTRK3Q16288 839 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 RTN1Q16799 776 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 CCDC174Q6PII3 467 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 NCAPG2Q86XI2 1143 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 NUDT12Q9BQG2 462 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 CCPG1Q9ULG6 757 aa16.8■□□□□ 0.28
CPSF1-206ENST00000531480 CTDP1Q9Y5B0 961 aaPredicted RBP16.8■□□□□ 0.28
CPSF1-206ENST00000531480 CNTNAP5Q8WYK1 1306 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 DNAJC25-GNG10A0A024R161 153 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 PNMA6FA0A0J9YX94 578 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 CCDC196A0A1B0GTZ2 297 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 MLLT1Q03111 559 aaPredicted RBP16.79■□□□□ 0.28
CPSF1-206ENST00000531480 MAP2K5Q13163 448 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 RABEP1Q15276 862 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 RAB11FIP4Q86YS3 637 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 CCAR1Q8IX12 1150 aaKnown RBP16.79■□□□□ 0.28
CPSF1-206ENST00000531480 CCDC144CPQ8IYA2 1237 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 RGS22Q8NE09 1264 aa16.79■□□□□ 0.28
CPSF1-206ENST00000531480 PXYLP1Q8TE99 480 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms