RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 EEF1GP26641 437 aaKnown RBP21.64■■□□□ 1.05
VPS28-213ENST00000530983 DAGLBQ8NCG7 672 aa21.64■■□□□ 1.05
VPS28-213ENST00000530983 DNAJC7Q99615 494 aa21.64■■□□□ 1.05
VPS28-213ENST00000530983 A0A1W2PQC6 194 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 USP17L3A6NCW0 530 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 USP17L4A6NCW7 530 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 H3BQF6 201 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 RHOBTB3O94955 611 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 TUBB4BP68371 445 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 USP17L1Q7RTZ2 530 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 OR8K1Q8NGG5 319 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 RASSF8Q8NHQ8 419 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 PLIN2Q99541 437 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 CCSER1Q9C0I3 900 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 TRIM10Q9UDY6 481 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 ROBO3Q96MS0 1386 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 UBA7P41226 1012 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 CCDC24Q8N4L8 307 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 GIMAP8Q8ND71 665 aaPredicted RBP21.63■■□□□ 1.05
VPS28-213ENST00000530983 NEK11Q8NG66 645 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 THAP9Q9H5L6 903 aa21.63■■□□□ 1.05
VPS28-213ENST00000530983 SBF2Q86WG5 1849 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 CTAGE15A4D2H0 777 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 STXBP3O00186 592 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 MYL1P05976 194 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 CTAGE8P0CG41 777 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 HEATR3Q7Z4Q2 680 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 CTAGE6Q86UF2 777 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 CTAGE4Q8IX94 777 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 NYXQ9GZU5 481 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 BARHL2Q9NY43 387 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 RGL2O15211 777 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 RHOXF2BP0C7M4 288 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 GNAQP50148 359 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 PIP4K2BP78356 416 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 TTI2Q6NXR4 508 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 WDR59Q6PJI9 974 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 CCDC148Q8NFR7 591 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 SH3RF3Q8TEJ3 882 aaPredicted RBP21.62■■□□□ 1.05
VPS28-213ENST00000530983 TRIM47Q96LD4 638 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 RHOXF2Q9BQY4 288 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 MYO6Q9UM54 1294 aa21.62■■□□□ 1.05
VPS28-213ENST00000530983 LUC7L2Q9Y383 392 aaKnown RBP21.62■■□□□ 1.05
VPS28-213ENST00000530983 PSMA7O14818 248 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 SPTY2D1Q68D10 685 aaPredicted RBP21.61■■□□□ 1.05
VPS28-213ENST00000530983 NBPF5PQ86XG9 351 aaPredicted RBP21.61■■□□□ 1.05
VPS28-213ENST00000530983 SRP68Q9UHB9 627 aaKnown RBP21.61■■□□□ 1.05
VPS28-213ENST00000530983 CAPN11Q9UMQ6 739 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 GUCA1BQ9UMX6 200 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 NAV1Q8NEY1 1877 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 CNTNAP4Q9C0A0 1308 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 NT5C2P49902 561 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 VSNL1P62760 191 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 GALNT17Q6IS24 598 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 NOA1Q8NC60 698 aaKnown RBP21.61■■□□□ 1.05
VPS28-213ENST00000530983 SETDB2Q96T68 719 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 MKNK2Q9HBH9 465 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 ABCB6Q9NP58 842 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 L1RE1Q9UN81 338 aa21.61■■□□□ 1.05
VPS28-213ENST00000530983 FLT1P17948 1338 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 LAD1O00515 517 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 PRPHP41219 470 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 STIM1Q13586 685 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 NCAPH2Q6IBW4 605 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 SLC44A5Q8NCS7 719 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 SUGCTQ9HAC7 445 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 MTMR7Q9Y216 660 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 PALM3A6NDB9 673 aaPredicted RBP21.6■■□□□ 1.05
VPS28-213ENST00000530983 PES1O00541 588 aaKnown RBP21.6■■□□□ 1.05
VPS28-213ENST00000530983 ERLIN1O75477 346 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 TSPY3P0CV98 308 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 TSPY8P0CW00 308 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 TM4SF1P30408 202 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 GYS2P54840 703 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 HERVK_113P62684 666 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 RAD51AP2Q09MP3 1159 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 HDXQ7Z353 690 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 DUSP9Q99956 384 aaKnown RBP21.6■■□□□ 1.05
VPS28-213ENST00000530983 TCP11L1Q9NUJ3 509 aa21.6■■□□□ 1.05
VPS28-213ENST00000530983 PSMD14O00487 310 aa21.59■■□□□ 1.05
VPS28-213ENST00000530983 SEMA3FQ13275 785 aa21.59■■□□□ 1.05
VPS28-213ENST00000530983 MCM6Q14566 821 aa21.59■■□□□ 1.05
VPS28-213ENST00000530983 TMEM47Q9BQJ4 181 aa21.59■■□□□ 1.05
VPS28-213ENST00000530983 HAUS4Q9H6D7 363 aa21.59■■□□□ 1.05
VPS28-213ENST00000530983 NARFQ9UHQ1 456 aa21.59■■□□□ 1.05
VPS28-213ENST00000530983 B4DLN1 442 aa21.58■■□□□ 1.05
VPS28-213ENST00000530983 DNM2P50570 870 aa21.58■■□□□ 1.05
VPS28-213ENST00000530983 TRAPPC11Q7Z392 1133 aa21.58■■□□□ 1.05
VPS28-213ENST00000530983 SLC51AQ86UW1 340 aa21.58■■□□□ 1.05
VPS28-213ENST00000530983 TTYH3Q9C0H2 523 aa21.58■■□□□ 1.05
VPS28-213ENST00000530983 PDE11AQ9HCR9 933 aa21.58■■□□□ 1.05
VPS28-213ENST00000530983 TFR2Q9UP52 801 aa21.58■■□□□ 1.05
VPS28-213ENST00000530983 LDHBP07195 334 aaKnown RBP21.58■■□□□ 1.04
VPS28-213ENST00000530983 SRGNP10124 158 aa21.58■■□□□ 1.04
VPS28-213ENST00000530983 PLCG1P19174 1290 aa21.58■■□□□ 1.04
VPS28-213ENST00000530983 DIXDC1Q155Q3 683 aa21.58■■□□□ 1.04
VPS28-213ENST00000530983 MEA1Q16626 185 aa21.58■■□□□ 1.04
VPS28-213ENST00000530983 CCDC178Q5BJE1 867 aa21.58■■□□□ 1.04
VPS28-213ENST00000530983 DHTKD1Q96HY7 919 aaPredicted RBP21.58■■□□□ 1.04
VPS28-213ENST00000530983 MAGEC2Q9UBF1 373 aaPredicted RBP21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms