RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	TCAF2	A6NFQ2	919 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	WTIP	A6NIX2	430 aa	Predicted RBP	3.93	□□□□□ -1.78
CD44-216	ENST00000525293	NPIPB6	E9PJ23	425 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	PEX10	O60683	326 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	MED14OS	P0DP75	135 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	ITGA4	P13612	1032 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	GLDC	P23378	1020 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	NOP2	P46087	812 aa	Known RBP	3.93	□□□□□ -1.78
CD44-216	ENST00000525293	CEBPA	P49715	358 aa	Predicted RBP	3.93	□□□□□ -1.78
CD44-216	ENST00000525293	TCEAL1	Q15170	157 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	HSF5	Q4G112	596 aa	Predicted RBP	3.93	□□□□□ -1.78
CD44-216	ENST00000525293	RTP2	Q5QGT7	225 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	GALNT18	Q6P9A2	607 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	CILP2	Q8IUL8	1156 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	FIBCD1	Q8N539	461 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	NAT16	Q8N8M0	369 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	TMEM52	Q8NDY8	209 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	OR6P1	Q8NGX9	317 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	SHD	Q96IW2	340 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	SGPP1	Q9BX95	441 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	SLC12A9	Q9BXP2	914 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	NOL6	Q9H6R4	1146 aa	Known RBP	3.93	□□□□□ -1.78
CD44-216	ENST00000525293	CRTAC1	Q9NQ79	661 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	SMG5	Q9UPR3	1016 aa	Known RBP	3.93	□□□□□ -1.78
CD44-216	ENST00000525293	INPP5F	Q9Y2H2	1132 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	FHOD1	Q9Y613	1164 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	SLC12A7	Q9Y666	1083 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293	TAF6L	Q9Y6J9	622 aa		3.93	□□□□□ -1.78
CD44-216	ENST00000525293		A0A1W2PQ45	241 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293		A0A1W2PQY0	241 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	CBFA2T2	O43439	604 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	PNLIP	P16233	465 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	PRKCA	P17252	672 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	DLG4	P78352	724 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	SRSF3	P84103	164 aa	Known RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	CYP4F8	P98187	520 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	SLC7A5	Q01650	507 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	PPP2R5D	Q14738	602 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	KCNA10	Q16322	511 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	HEATR6	Q6AI08	1181 aa	Known RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	ADAT2	Q7Z6V5	191 aa	Known RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	SLCO6A1	Q86UG4	719 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	LRRC56	Q8IYG6	542 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	C19orf47	Q8N9M1	422 aa	Known RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	NUP43	Q8NFH3	380 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	ADCY4	Q8NFM4	1077 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	SEC16B	Q96JE7	1060 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	ZDHHC15	Q96MV8	337 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	FCRL3	Q96P31	734 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	JMJD8	Q96S16	334 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	HAUS7	Q99871	368 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	CCSER2	Q9H7U1	834 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	PHAX	Q9H814	394 aa	Known RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	CD320	Q9NPF0	282 aa		3.92	□□□□□ -1.78
CD44-216	ENST00000525293	DIS3	Q9Y2L1	958 aa	Known RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	SF3B6	Q9Y3B4	125 aa	Known RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293	CCDC9	Q9Y3X0	531 aa	Known RBP	3.92	□□□□□ -1.78
CD44-216	ENST00000525293		A0A087WZG4	1122 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	TEX51	A0A1B0GUA7	166 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293		A0A1W2PQ27	194 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293		A0A1W2PQ64	194 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293		A0A1W2PQC6	194 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293		A0A1W2PQD8	194 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	FGF10	O15520	208 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-216	ENST00000525293	VAMP4	O75379	141 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	EPHX1	P07099	455 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	CD3E	P07766	207 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	IFNGR1	P15260	489 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	ERCC5	P28715	1186 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-216	ENST00000525293	ARL4A	P40617	200 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	POU4F1	Q01851	419 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	HLA-DQA1	Q5Y7H0	255 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	JAML	Q86YT9	394 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	C1QL4	Q86Z23	238 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	FAM169B	Q8N8A8	192 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	ANAPC16	Q96DE5	110 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	FGD4	Q96M96	766 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	GCM1	Q9NP62	436 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	SIRT5	Q9NXA8	310 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	WHRN	Q9P202	907 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	IMPACT	Q9P2X3	320 aa		3.91	□□□□□ -1.78
CD44-216	ENST00000525293	SEMA7A	O75326	666 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	PPM1B	O75688	479 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	MPO	P05164	745 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	ATF4	P18848	351 aa	Predicted RBP	3.9	□□□□□ -1.79
CD44-216	ENST00000525293	VIPR1	P32241	457 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	CASP7	P55210	303 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	ERVFRD-1	P60508	538 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	LAPTM5	Q13571	262 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	CIAPIN1	Q6FI81	312 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	KIAA1211L	Q6NV74	962 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	SPOCD1	Q6ZMY3	1216 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	KLHL6	Q8WZ60	621 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	ZNF428	Q96B54	188 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	KLHL25	Q9H0H3	589 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	GBP3	Q9H0R5	595 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	IRF2BPL	Q9H1B7	796 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	ACSL6	Q9UKU0	697 aa		3.9	□□□□□ -1.79
CD44-216	ENST00000525293	SUGT1	Q9Y2Z0	365 aa		3.9	□□□□□ -1.79

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