RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CEP85LQ5SZL2 805 aa14□□□□□ -0.17
USP53-209ENST00000514665 NAA35Q5VZE5 725 aa14□□□□□ -0.17
USP53-209ENST00000514665 LARGE2Q8N3Y3 721 aa14□□□□□ -0.17
USP53-209ENST00000514665 TSKSQ9UJT2 592 aa14□□□□□ -0.17
USP53-209ENST00000514665 KIAA1024Q9UPX6 916 aa14□□□□□ -0.17
USP53-209ENST00000514665 SHROOM2Q13796 1616 aa14□□□□□ -0.17
USP53-209ENST00000514665 PLEKHA8P1O95397 391 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 CACNB1Q02641 598 aaPredicted RBP13.99□□□□□ -0.17
USP53-209ENST00000514665 RASSF7Q02833 373 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 FBXO38Q6PIJ6 1188 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 DDX25Q9UHL0 483 aaKnown RBP13.99□□□□□ -0.17
USP53-209ENST00000514665 GINS2Q9Y248 185 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 SRPRBQ9Y5M8 271 aaKnown RBP13.99□□□□□ -0.17
USP53-209ENST00000514665 SUSD4Q5VX71 490 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 USP17L2Q6R6M4 530 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 UHMK1Q8TAS1 419 aaKnown RBP13.99□□□□□ -0.17
USP53-209ENST00000514665 IL25Q9H293 177 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 COMMD10Q9Y6G5 202 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 GJA3Q9Y6H8 435 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 TRAPPC10P48553 1259 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 GNGT1P63211 74 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 DPH5Q9H2P9 285 aa13.99□□□□□ -0.17
USP53-209ENST00000514665 E7EVH7 732 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 BCRP11274 1271 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 VPS41P49754 854 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 AMFRQ9UKV5 643 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 KRIT1O00522 736 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 PCP11498 1178 aaKnown RBP13.98□□□□□ -0.17
USP53-209ENST00000514665 PABPC4Q13310 644 aaKnown RBP eCLIP13.98□□□□□ -0.17
USP53-209ENST00000514665 TBCKQ8TEA7 893 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 IFT74Q96LB3 600 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 STAMBPO95630 424 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 H2AFZP0C0S5 128 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 CXCR5P32302 372 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 CLCN6P51797 869 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 PRKG1Q13976 671 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 KCTD16Q68DU8 428 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 H2AFVQ71UI9 128 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 CYB5R4Q7L1T6 521 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 PNMA8AQ86V59 439 aaPredicted RBP13.98□□□□□ -0.17
USP53-209ENST00000514665 FMR1NBQ8N0W7 255 aaPredicted RBP13.98□□□□□ -0.17
USP53-209ENST00000514665 BCAS4Q8TDM0 211 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 PCDHA4Q9UN74 947 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 AGTPBP1Q9UPW5 1226 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 TMEM232C9JQI7 657 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 SLC16A2P36021 539 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 GUCY2DQ02846 1103 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 SCARF1Q14162 830 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 SETDB1Q15047 1291 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 GALNT17Q6IS24 598 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 STOX1Q6ZVD7 989 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 LARP4BQ92615 738 aaKnown RBP13.98□□□□□ -0.17
USP53-209ENST00000514665 COA7Q96BR5 231 aa13.98□□□□□ -0.17
USP53-209ENST00000514665 KDM3AQ9Y4C1 1321 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 USP17L3A6NCW0 530 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 USP17L4A6NCW7 530 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 CD19P15391 556 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 CTNNA1P35221 906 aaKnown RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 SLFN13Q68D06 897 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 TTC19Q6DKK2 380 aaPredicted RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 USP17L1Q7RTZ2 530 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 SMCR8Q8TEV9 937 aaPredicted RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 P2RX5Q93086 422 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 TSNARE1Q96NA8 513 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 PARD6BQ9BYG5 372 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 A2ML1A8K2U0 1454 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 HECW2Q9P2P5 1572 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 H0YIN7 160 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 GNA14O95837 355 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 FAM178BQ8IXR5 827 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 SYCE1Q8N0S2 351 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 SPICE1Q8N0Z3 855 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 CCDC127Q96BQ5 260 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 PAGE5Q96GU1 130 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 GDAQ9Y2T3 454 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 THRAP3Q9Y2W1 955 aaKnown RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 MED14O60244 1454 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 GLI2P10070 1586 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 EEF1GP26641 437 aaKnown RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 NCBP1Q09161 790 aaKnown RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 CERKLQ49MI3 558 aaPredicted RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 INTS8Q75QN2 995 aaKnown RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 IQCDQ96DY2 449 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 PIGSQ96S52 555 aa13.97□□□□□ -0.17
USP53-209ENST00000514665 RNF17Q9BXT8 1623 aaKnown RBP13.97□□□□□ -0.17
USP53-209ENST00000514665 ANKARQ7Z5J8 1434 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 PTPREP23469 700 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 ICA1Q05084 483 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 DCUN1D2Q6PH85 259 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 USP21Q9UK80 565 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 USP27XA6NNY8 438 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 ATP2B4P23634 1241 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 DLGAP5Q15398 846 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 SARM1Q6SZW1 724 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 GBP6Q6ZN66 633 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 FBXO11Q86XK2 927 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 MGARPQ8TDB4 240 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 SMC6Q96SB8 1091 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 CPVLQ9H3G5 476 aa13.96□□□□□ -0.17
USP53-209ENST00000514665 MKRN1Q9UHC7 482 aaKnown RBP13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms