RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 CAPN11Q9UMQ6 739 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 DNM3Q9UQ16 869 aa12.23□□□□□ -0.45
LIMCH1-217ENST00000512946 A0A1W2PQ27 194 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 A0A1W2PQ64 194 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 A0A1W2PQD8 194 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 GSTA4O15217 222 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 HEXIM1O94992 359 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 SNRPA1P09661 255 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 XRCC5P13010 732 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 CLCN6P51797 869 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 PDE1BQ01064 536 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 GNPTABQ3T906 1256 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 HERC4Q5GLZ8 1057 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 C9orf84Q5VXU9 1444 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 GTPBP10A4D1E9 387 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 ARHGEF35A5YM69 484 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 SYCE1LA8MT33 242 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 EXOC3O60645 756 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 IFNB1P01574 187 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 S100BP04271 92 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 MSH2P43246 934 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 ZNF174Q15697 407 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 TXNDC2Q86VQ3 553 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 WDR75Q8IWA0 830 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 MRPL50Q8N5N7 158 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 FBXL13Q8NEE6 735 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 LINS1Q8NG48 757 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 U2AF1L4Q8WU68 220 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 CACTINQ8WUQ7 758 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 DPH5Q9H2P9 285 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 IFNAR2P48551 515 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 STAT2P52630 851 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 ANKRD13DQ6ZTN6 518 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 NBPF5PQ86XG9 351 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 HOOK2Q96ED9 719 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 PSMB7Q99436 277 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 LRWD1Q9UFC0 647 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 TSC22D4Q9Y3Q8 395 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 NOC2LQ9Y3T9 749 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 GYG2O15488 501 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 MT-ND3P03897 115 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 PARP1P09874 1014 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 MRPS35P82673 323 aaKnown RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 TBC1D1Q86TI0 1168 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 MEIS3Q99687 375 aa12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-217ENST00000512946 ADCY3O60266 1144 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 ELF1P32519 619 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 DPH6Q7L8W6 267 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 PARD6BQ9BYG5 372 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 ING2Q9H160 280 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 MKL2Q9ULH7 1088 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 SRGAP2BP0DMP2 458 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 ADKP55263 362 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 SPARCL1Q14515 664 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 KSR2Q6VAB6 950 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 HORMAD1Q86X24 394 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 RNF169Q8NCN4 708 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 MRPS26Q9BYN8 205 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 CUEDC2Q9H467 287 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 USTQ9Y2C2 406 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 KCTD16Q68DU8 428 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 TUBGCP3Q96CW5 907 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 NUDT16Q96DE0 195 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 MTBPQ96DY7 904 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 MRGBPQ9NV56 204 aa12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 CHCHD3Q9NX63 227 aaKnown RBP12.21□□□□□ -0.45
LIMCH1-217ENST00000512946 CEP85Q6P2H3 762 aa12.21□□□□□ -0.46
LIMCH1-217ENST00000512946 ENOX1Q8TC92 643 aaKnown RBP12.21□□□□□ -0.46
LIMCH1-217ENST00000512946 MAGOHBQ96A72 148 aaKnown RBP12.21□□□□□ -0.46
LIMCH1-217ENST00000512946 FAM212AQ96EL1 285 aa12.21□□□□□ -0.46
LIMCH1-217ENST00000512946 STK17AQ9UEE5 414 aa12.21□□□□□ -0.46
LIMCH1-217ENST00000512946 SOS2Q07890 1332 aaPredicted RBP12.21□□□□□ -0.46
LIMCH1-217ENST00000512946 IQANK1A0A1B0GTG1 560 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 ZBBXA8MT70 800 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 MORC3Q14149 939 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 LETM2Q2VYF4 491 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 KRT39Q6A163 491 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 CENPUQ71F23 418 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 ICA1LQ8NDH6 482 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 SNX29Q8TEQ0 813 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 CNBD2Q96M20 576 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 GEMIN8Q9NWZ8 242 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 UTP6Q9NYH9 597 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 INSRP06213 1382 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 CARSP49589 748 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 GABPAQ06546 454 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 ARHGAP44Q17R89 818 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 THAP11Q96EK4 314 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 PCDHB13Q9Y5F0 798 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 CC2D2AQ9P2K1 1620 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 RAD54L2Q9Y4B4 1467 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 HNRNPRO43390 633 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 GTPBP6O43824 516 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 TCP11X2Q5H9J9 407 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 TTC6Q86TZ1 520 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 ZNF653Q96CK0 615 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 EPB41L5Q9HCM4 733 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 ZNF148Q9UQR1 794 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms