RNA–Protein interactions for RNA: ENST00000508871.5

NEDD4-209, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best)

Gene NEDD4, Length 5,707 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-209ENST00000508871 HLTFQ14527 1009 aaKnown RBP eCLIP4.4□□□□□ -1.71
NEDD4-209ENST00000508871 ABCB5Q2M3G0 1257 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 CTR9Q6PD62 1173 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 CCDC129Q6ZRS4 1044 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 LUZP1Q86V48 1076 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 CCDC170Q8IYT3 715 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 SPC24Q8NBT2 197 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 TRPM4Q8TD43 1214 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 GGNBP2Q9H3C7 697 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 HCN4Q9Y3Q4 1203 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 GOLGA6L10A0A0M3HER8 536 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 FSD2A1L4K1 749 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 FAM221BA6H8Z2 402 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 POLR3DP05423 398 aaPredicted RBP4.4□□□□□ -1.71
NEDD4-209ENST00000508871 STMN1P16949 149 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 TMPOP42166 694 aaKnown RBP4.4□□□□□ -1.71
NEDD4-209ENST00000508871 HSP90B2PQ58FF3 399 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 BBOF1Q8ND07 529 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 MUL1Q969V5 352 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 MAK16Q9BXY0 300 aaKnown RBP4.4□□□□□ -1.71
NEDD4-209ENST00000508871 FKBPLQ9UIM3 349 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 PCDHGB6Q9Y5F9 930 aa4.4□□□□□ -1.71
NEDD4-209ENST00000508871 IPO5O00410 1097 aaKnown RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 MMEP08473 750 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 NAT2P11245 290 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 SCP2P22307 547 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 EIF4A3P38919 411 aaKnown RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 SESN3P58005 492 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 AMPD3Q01432 767 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 GPR139Q6DWJ6 353 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 FBXO38Q6PIJ6 1188 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 TPH2Q8IWU9 490 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 POF1BQ8WVV4 589 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 CDCA7LQ96GN5 454 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 HAUS7Q99871 368 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 CABP5Q9NP86 173 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 PDRG1Q9NUG6 133 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ZHX1Q9UKY1 873 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 PTCH2Q9Y6C5 1203 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 PHLPP1O60346 1717 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 CPDO75976 1380 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 GPR37O15354 613 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 DDHD2O94830 711 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 FGFR1P11362 822 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 DDIT3P35638 169 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ORC1Q13415 861 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 CWF19L2Q2TBE0 894 aaKnown RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ARSJQ5FYB0 599 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 NUP93Q8N1F7 819 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 NGDNQ8NEJ9 315 aaKnown RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ASAP3Q8TDY4 903 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 NOC3LQ8WTT2 800 aaKnown RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 SEC16BQ96JE7 1060 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 SETDB2Q96T68 719 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 CERS4Q9HA82 394 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 GINM1Q9NU53 330 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 KLHL3Q9UH77 587 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ESPNB1AK53 854 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 H3BRJ5 948 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ORC4O43929 436 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 TPM3P06753 285 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 EEPD1Q7L9B9 569 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 RASSF3Q86WH2 238 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 NME9Q86XW9 330 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 MYCT1Q8N699 235 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 VPS11Q9H270 941 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 IFT80Q9P2H3 777 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 CPSF2Q9P2I0 782 aaKnown RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 SEL1LQ9UBV2 794 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 LTBP4Q8N2S1 1624 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ROBO1Q9Y6N7 1651 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 A8MV72 311 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 EIF1AYO14602 144 aaKnown RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 APAF1O14727 1248 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 AP1G1O43747 822 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 GNAI1P63096 354 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 PIP4K2BP78356 416 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 VPS72Q15906 364 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 TBC1D10BQ4KMP7 808 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 CCDC93Q567U6 631 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 MICALL2Q8IY33 904 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 MAGEB10Q96LZ2 347 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 TBCBQ99426 244 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 C2orf49Q9BVC5 232 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 C19orf44Q9H6X5 657 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 DBNDD1Q9H9R9 158 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 NLRC4Q9NPP4 1024 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 AKAP10O43572 662 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 CENPCQ03188 943 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 INO80DQ53TQ3 878 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 AP1ARQ63HQ0 302 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 TXLNBQ8N3L3 684 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 NEK11Q8NG66 645 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ADAM32Q8TC27 787 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 OXER1Q8TDS5 423 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 ALDH8A1Q9H2A2 487 aaPredicted RBP4.39□□□□□ -1.71
NEDD4-209ENST00000508871 STARD7Q9NQZ5 370 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 UBP1Q9NZI7 540 aa4.39□□□□□ -1.71
NEDD4-209ENST00000508871 MTRRQ9UBK8 725 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms