RNA–Protein interactions for RNA: ENST00000508546.5

NEDD9-211, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 5

Gene NEDD9, Length 581 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-211ENST00000508546 ARMT1Q9H993 441 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 SLC28A3Q9HAS3 691 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 SPC25Q9HBM1 224 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 IL23AQ9NPF7 189 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 ZHX1Q9UKY1 873 aaPredicted RBP11.31□□□□□ -0.6
NEDD9-211ENST00000508546 EXOC6BQ9Y2D4 811 aa11.31□□□□□ -0.6
NEDD9-211ENST00000508546 GOLIM4O00461 696 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 ATP2A1O14983 1001 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 TLR3O15455 904 aaKnown RBP11.3□□□□□ -0.6
NEDD9-211ENST00000508546 ADCY6O43306 1168 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 CD4P01730 458 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 ACVR2BQ13705 512 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 HSP90AB4PQ58FF6 505 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 FAM83BQ5T0W9 1011 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 PPP2R2DQ66LE6 453 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 KRT40Q6A162 431 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 SNRNP48Q6IEG0 339 aaKnown RBP11.3□□□□□ -0.6
NEDD9-211ENST00000508546 AMOTL1Q8IY63 956 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 VTI1AQ96AJ9 217 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 SLF1Q9BQI6 1058 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.3□□□□□ -0.6
NEDD9-211ENST00000508546 RIPK3Q9Y572 518 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 SPTBN4Q9H254 2564 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 ZBED9Q6R2W3 1325 aa11.3□□□□□ -0.6
NEDD9-211ENST00000508546 CYP2D7A0A087X1C5 515 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 USP17L12C9JPN9 530 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 USP17L21D6R901 530 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 PRKAB2O43741 272 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 MBD4O95243 580 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 MYOGP15173 224 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 ADD2P35612 726 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 IRX5P78411 483 aaPredicted RBP11.29□□□□□ -0.6
NEDD9-211ENST00000508546 CCDC144BQ3MJ40 725 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 GNASQ5JWF2 1037 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 DIEXFQ68CQ4 756 aaKnown RBP11.29□□□□□ -0.6
NEDD9-211ENST00000508546 ITPRIPQ8IWB1 547 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 FTSJ3Q8IY81 847 aaKnown RBP11.29□□□□□ -0.6
NEDD9-211ENST00000508546 PRPF38AQ8NAV1 312 aaKnown RBP11.29□□□□□ -0.6
NEDD9-211ENST00000508546 SLC43A3Q8NBI5 491 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 RHPN1Q8TCX5 695 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 ANKS1AQ92625 1134 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 DNAJC2Q99543 621 aaKnown RBP11.29□□□□□ -0.6
NEDD9-211ENST00000508546 PPP1R12CQ9BZL4 782 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 IL1RAPL2Q9NP60 686 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 COG5Q9UP83 839 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 MTCH2Q9Y6C9 303 aa11.29□□□□□ -0.6
NEDD9-211ENST00000508546 EPOPA6NHQ4 379 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 APBB1O00213 710 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 RFXAPO00287 272 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 CTAGE5O15320 804 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 FGBP02675 491 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 RLBP1P12271 317 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 CYP2C18P33260 490 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 RABGGTBP53611 331 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 CLASRPQ8N2M8 674 aaKnown RBP11.28□□□□□ -0.6
NEDD9-211ENST00000508546 DDRGK1Q96HY6 314 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 FGD4Q96M96 766 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.28□□□□□ -0.6
NEDD9-211ENST00000508546 SEZ6LQ9BYH1 1024 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 KATNBL1Q9H079 304 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 NYAP2Q9P242 653 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 C5orf42Q9H799 3197 aa11.28□□□□□ -0.6
NEDD9-211ENST00000508546 SCN5AQ14524 2016 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 RAD21O60216 631 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 CABYRO75952 493 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 CTR9Q6PD62 1173 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 ARMCX2Q7L311 632 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 CHST13Q8NET6 341 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 KIF1BPQ96EK5 621 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 NUP88Q99567 741 aaPredicted RBP11.27□□□□□ -0.61
NEDD9-211ENST00000508546 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.27□□□□□ -0.61
NEDD9-211ENST00000508546 KCNH6Q9H252 994 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 HIPK3Q9H422 1215 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 SLC38A10Q9HBR0 1119 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 PAG1Q9NWQ8 432 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 FBXO40Q9UH90 709 aa11.27□□□□□ -0.61
NEDD9-211ENST00000508546 CACNA1BQ00975 2339 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 F5H6K3 240 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 ST18O60284 1047 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 ZBED4O75132 1171 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 NDUFB10O96000 172 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 IFIT2P09913 472 aaKnown RBP11.26□□□□□ -0.61
NEDD9-211ENST00000508546 POU3F3P20264 500 aaPredicted RBP11.26□□□□□ -0.61
NEDD9-211ENST00000508546 OAZ1P54368 228 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 KLRC3Q07444 240 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 UBE3CQ15386 1083 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 SLFNL1Q499Z3 407 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 CCDC144CPQ8IYA2 1237 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 CPXCR1Q8N123 301 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 ANKRD35Q8N283 1001 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 HLA-CQ95604 372 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 ARPP21Q9UBL0 812 aaPredicted RBP11.26□□□□□ -0.61
NEDD9-211ENST00000508546 PCDHA11Q9Y5I1 949 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 LCTP09848 1927 aa11.26□□□□□ -0.61
NEDD9-211ENST00000508546 GTPBP6O43824 516 aaPredicted RBP11.25□□□□□ -0.61
NEDD9-211ENST00000508546 FDX1P10109 184 aa11.25□□□□□ -0.61
NEDD9-211ENST00000508546 ATP5JP18859 108 aa11.25□□□□□ -0.61
NEDD9-211ENST00000508546 RASA1P20936 1047 aa11.25□□□□□ -0.61
NEDD9-211ENST00000508546 FOXK2Q01167 660 aa11.25□□□□□ -0.61
NEDD9-211ENST00000508546 TNFAIP2Q03169 654 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms