RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 ERVK-9P63128 1117 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 ERVK-24P63145 666 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 TMEM132BQ14DG7 1078 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 CDC37Q16543 378 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 ME3Q16798 604 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 FAM110CQ1W6H9 321 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 Q3C1V9 767 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 USH1GQ495M9 461 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 SNRNP48Q6IEG0 339 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 C17orf99Q6UX52 265 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 TMTC3Q6ZXV5 915 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 NCAPG2Q86XI2 1143 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 SRBD1Q8N5C6 995 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 NECAB1Q8N987 351 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 PIGSQ96S52 555 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 R3HDMLQ9H3Y0 253 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 SLC38A10Q9HBR0 1119 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 NCOA5Q9HCD5 579 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 TXNRD2Q9NNW7 524 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 BTBD7Q9P203 1132 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 CCPG1Q9ULG6 757 aa9.52□□□□□ -0.89
LIMCH1-206ENST00000505705 ZBTB5O15062 677 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 PFKFB2O60825 505 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 FKTNO75072 461 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 PPFIA3O75145 1194 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 FMNL1O95466 1100 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 SLC25A27O95847 323 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 ALAS1P13196 640 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 SMARCA1P28370 1054 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 OAZ1P54368 228 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 SSRP1Q08945 709 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 SCRN1Q12765 414 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 TRAF1Q13077 416 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 ARHGEF6Q15052 776 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 QRICH1Q2TAL8 776 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 NBPF11Q86T75 865 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 FBXO11Q86XK2 927 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 CCDC83Q8IWF9 413 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 HSCBQ8IWL3 235 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 TRIM22Q8IYM9 498 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 ERO1AQ96HE7 468 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 AGBL1Q96MI9 1066 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 SPZ1Q9BXG8 430 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 CFHR5Q9BXR6 569 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 SLC26A6Q9BXS9 759 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 TEX13BQ9BXU2 312 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 SPATC1LQ9H0A9 340 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 RANBP17Q9H2T7 1088 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 RIOX1Q9H6W3 641 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 JMJD4Q9H9V9 463 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 SH2B1Q9NRF2 756 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 HOMER2Q9NSB8 354 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 PNMA2Q9UL42 364 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 ADAMTS5Q9UNA0 930 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 HPS5Q9UPZ3 1129 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 IVNS1ABPQ9Y6Y0 642 aa9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 V9GY48 417 aaPredicted RBP9.51□□□□□ -0.89
LIMCH1-206ENST00000505705 THSD7BQ9C0I4 1608 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 PNMA6FA0A0J9YX94 578 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 hCG_1642624A0A1W2PR95 340 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 TNPO2O14787 897 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 FOXN1O15353 648 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 CYTH3O43739 400 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 CNMDO75829 334 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 LARGE1O95461 756 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 ICAM1P05362 532 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 BCRP11274 1271 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 PRKAR2AP13861 404 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 ERCC3P19447 782 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 MAPK4P31152 587 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 COPB2P35606 906 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 PSMC4P43686 418 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 CTCFP49711 727 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 FCGRTP55899 365 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 ZNF296Q8WUU4 475 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 PHKBQ93100 1093 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 GTF3C6Q969F1 213 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 COA7Q96BR5 231 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 TRERF1Q96PN7 1200 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 AMNQ9BXJ7 453 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 MOV10L1Q9BXT6 1211 aaKnown RBP9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 EFCC1Q9HA90 598 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 FAM217BQ9NTX9 383 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 MORF4L1Q9UBU8 362 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 PCDHA1Q9Y5I3 950 aa9.5□□□□□ -0.89
LIMCH1-206ENST00000505705 PRPF3O43395 683 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 HSP90AA1P07900 732 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 IFNAR1P17181 557 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 HOXD10P28358 340 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 LBX1P52954 281 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 LACTBP83111 547 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 TKFCQ3LXA3 575 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 HEATR3Q7Z4Q2 680 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 PLEKHH3Q7Z736 793 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 RIOX2Q8IUF8 465 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 ANKRD35Q8N283 1001 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 REPS2Q8NFH8 660 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 CD99L2Q8TCZ2 262 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 DDX11Q96FC9 970 aa9.49□□□□□ -0.89
LIMCH1-206ENST00000505705 TMX3Q96JJ7 454 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms