RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 XPNPEP3Q9NQH7 507 aa21.19■□□□□ 0.98
SQSTM1-209ENST00000504627 AKR1A1P14550 325 aa21.18■□□□□ 0.98
SQSTM1-209ENST00000504627 TAL1P17542 331 aaPredicted RBP21.18■□□□□ 0.98
SQSTM1-209ENST00000504627 MAGEA10P43363 369 aaPredicted RBP21.18■□□□□ 0.98
SQSTM1-209ENST00000504627 ACAD9Q9H845 621 aa21.18■□□□□ 0.98
SQSTM1-209ENST00000504627 PLA2G6O60733 806 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 CHMLP26374 656 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 BMP8BP34820 402 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 LRRC41Q15345 812 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 AKNAD1Q5T1N1 836 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 CCDC174Q6PII3 467 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 RNF180Q86T96 592 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 DCAF4Q8WV16 495 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 AGBL1Q96MI9 1066 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 RNF41Q9H4P4 317 aaPredicted RBP21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 PRKAG2Q9UGJ0 569 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 ZHX1Q9UKY1 873 aaPredicted RBP21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 SYNGAP1Q96PV0 1343 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 PLXNA1Q9UIW2 1896 aa21.17■□□□□ 0.98
SQSTM1-209ENST00000504627 DNAJC25-GNG10A0A024R161 153 aa21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 ZNF213O14771 459 aa21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 ZNF865P0CJ78 1059 aaPredicted RBP21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 TOP1P11387 765 aaKnown RBP21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 PCP11498 1178 aaKnown RBP21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 ADCYAP1R1P41586 468 aa21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 RTP1P59025 263 aa21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.16■□□□□ 0.981e-6■■□□□ 14.4
SQSTM1-209ENST00000504627 ZNF467Q7Z7K2 595 aaPredicted RBP21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 FERMT2Q96AC1 680 aa21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 UBE2OQ9C0C9 1292 aaKnown RBP21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 RNF146Q9NTX7 359 aa21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 PRR12Q9ULL5 1215 aa21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 ATP11BQ9Y2G3 1177 aa21.16■□□□□ 0.98
SQSTM1-209ENST00000504627 RAD50Q92878 1312 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 ALAS1P13196 640 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 NOVP48745 357 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 SNAP25P60880 206 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 TKFCQ3LXA3 575 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 MAMDC4Q6UXC1 1216 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 SLC39A5Q6ZMH5 540 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 RASGRP2Q7LDG7 609 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 TRERF1Q96PN7 1200 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 TMEM47Q9BQJ4 181 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 TCP11L1Q9NUJ3 509 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 FAM184BQ9ULE4 1060 aa21.15■□□□□ 0.98
SQSTM1-209ENST00000504627 ZNF536O15090 1300 aa21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 POTEB2H3BUK9 544 aa21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 SNAI1O95863 264 aaPredicted RBP21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 PGK1P00558 417 aa21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 MDM2Q00987 491 aaPredicted RBP21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 RUFY2Q8WXA3 655 aa21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 ESR2Q92731 530 aa21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 LBHD1Q9BQE6 289 aaPredicted RBP21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 UPF2Q9HAU5 1272 aaKnown RBP21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 TSHZ2Q9NRE2 1034 aa21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 DNAH12Q6ZR08 3092 aa21.14■□□□□ 0.97
SQSTM1-209ENST00000504627 SMCHD1A6NHR9 2005 aa21.13■□□□□ 0.97
SQSTM1-209ENST00000504627 ACVR2BQ13705 512 aa21.13■□□□□ 0.97
SQSTM1-209ENST00000504627 TBC1D10CQ8IV04 446 aa21.13■□□□□ 0.97
SQSTM1-209ENST00000504627 LENG1Q96BZ8 264 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-209ENST00000504627 ESYT1Q9BSJ8 1104 aa21.13■□□□□ 0.97
SQSTM1-209ENST00000504627 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.13■□□□□ 0.97
SQSTM1-209ENST00000504627 FRMPD2Q68DX3 1309 aaPredicted RBP21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 SLC16A2P36021 539 aa21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 CNTN2Q02246 1040 aa21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 ARMCX2Q7L311 632 aa21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 TTC14Q96N46 770 aa21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 ABHD16BQ9H3Z7 469 aa21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 GPCPD1Q9NPB8 672 aa21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 A1CFQ9NQ94 594 aaKnown RBP21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 CCPG1Q9ULG6 757 aa21.12■□□□□ 0.97
SQSTM1-209ENST00000504627 REC8O95072 547 aa21.11■□□□□ 0.97
SQSTM1-209ENST00000504627 SYDE2Q5VT97 1194 aa21.11■□□□□ 0.97
SQSTM1-209ENST00000504627 TTBK2Q6IQ55 1244 aa21.11■□□□□ 0.97
SQSTM1-209ENST00000504627 CCDC144CPQ8IYA2 1237 aa21.11■□□□□ 0.97
SQSTM1-209ENST00000504627 TDHQ8IZJ6 230 aa21.11■□□□□ 0.97
SQSTM1-209ENST00000504627 PRDM5Q9NQX1 630 aaPredicted RBP21.11■□□□□ 0.97
SQSTM1-209ENST00000504627 PHF24Q9UPV7 400 aa21.11■□□□□ 0.97
SQSTM1-209ENST00000504627 NEDD4P46934 1319 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 ICAM1P05362 532 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 IMMTQ16891 758 aaKnown RBP21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 TRIM60Q495X7 471 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 NSMFQ6X4W1 530 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 FGD4Q96M96 766 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 ZKSCAN3Q9BRR0 538 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 DSCC1Q9BVC3 393 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 SPC25Q9HBM1 224 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 CTNNA3Q9UI47 895 aa21.1■□□□□ 0.97
SQSTM1-209ENST00000504627 SZT2Q5T011 3432 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 ASB14A6NK59 587 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 SGSM2O43147 1006 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 ADAMTS4O75173 837 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 DUSP11O75319 330 aaKnown RBP21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 SEC24BO95487 1268 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 PDHBP11177 359 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 NT5C2P49902 561 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 CCDC178Q5BJE1 867 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 MUM1L1Q5H9M0 696 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 BTNL9Q6UXG8 535 aa21.09■□□□□ 0.97
SQSTM1-209ENST00000504627 IQCA1Q86XH1 822 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms