RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ERVK-24P63145 666 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 Q3C1V9 767 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 MB21D1Q8N884 522 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 REPS2Q8NFH8 660 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 AGBL1Q96MI9 1066 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 PIGSQ96S52 555 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 CFHR5Q9BXR6 569 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 RANBP17Q9H2T7 1088 aaKnown RBP13.81□□□□□ -0.2
CUX1-210ENST00000497815 RLFQ13129 1914 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 NID2Q14112 1375 aa13.81□□□□□ -0.2
CUX1-210ENST00000497815 PARP14Q460N5 1801 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 GPR25O00155 361 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 PPP2R5BQ15173 497 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 FAM110CQ1W6H9 321 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 QRICH1Q2TAL8 776 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 WDR78Q5VTH9 848 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 SNRNP48Q6IEG0 339 aaKnown RBP13.8□□□□□ -0.2
CUX1-210ENST00000497815 CCDC83Q8IWF9 413 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 CCAR1Q8IX12 1150 aaKnown RBP13.8□□□□□ -0.2
CUX1-210ENST00000497815 PHKBQ93100 1093 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 GTF3C6Q969F1 213 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 RRP36Q96EU6 259 aaKnown RBP13.8□□□□□ -0.2
CUX1-210ENST00000497815 ZSCAN31Q96LW9 406 aaPredicted RBP13.8□□□□□ -0.2
CUX1-210ENST00000497815 SPZ1Q9BXG8 430 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 SPATC1LQ9H0A9 340 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 RIOX1Q9H6W3 641 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 MORF4L1Q9UBU8 362 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 ZNF214Q9UL59 606 aaPredicted RBP13.8□□□□□ -0.2
CUX1-210ENST00000497815 CCPG1Q9ULG6 757 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 A0A0G2JMZ2 1700 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 CNTNAP5Q8WYK1 1306 aa13.8□□□□□ -0.2
CUX1-210ENST00000497815 CEP350Q5VT06 3117 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 ZBTB5O15062 677 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 FOXN1O15353 648 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 FDX1P10109 184 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 STAT3P40763 770 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 MCM2P49736 904 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 SP3Q02447 781 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 FUT2Q10981 343 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 USH1GQ495M9 461 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 CPLX2Q6PUV4 134 aaKnown RBP13.79□□□□□ -0.2
CUX1-210ENST00000497815 NCAPG2Q86XI2 1143 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 IL27Q8NEV9 243 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 SLC26A6Q9BXS9 759 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 MOV10L1Q9BXT6 1211 aaKnown RBP13.79□□□□□ -0.2
CUX1-210ENST00000497815 TEX13BQ9BXU2 312 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 PORCNQ9H237 461 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 EFCC1Q9HA90 598 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 CWC22Q9HCG8 908 aaKnown RBP13.79□□□□□ -0.2
CUX1-210ENST00000497815 HOMER2Q9NSB8 354 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 SEC63Q9UGP8 760 aaKnown RBP13.79□□□□□ -0.2
CUX1-210ENST00000497815 V9GY48 417 aaPredicted RBP13.79□□□□□ -0.2
CUX1-210ENST00000497815 ZNF536O15090 1300 aa13.79□□□□□ -0.2
CUX1-210ENST00000497815 ICAM1P05362 532 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 ALAS1P13196 640 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 SMARCA1P28370 1054 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 OAZ1P54368 228 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 CCNA1P78396 465 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 AKAP17AQ02040 695 aaKnown RBP13.78□□□□□ -0.2
CUX1-210ENST00000497815 ST3GAL1Q11201 340 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 NTRK3Q16288 839 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 FBXO11Q86XK2 927 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 RIOX2Q8IUF8 465 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 ZNF296Q8WUU4 475 aaPredicted RBP13.78□□□□□ -0.2
CUX1-210ENST00000497815 MTMR8Q96EF0 704 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 TMX3Q96JJ7 454 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 SH2B1Q9NRF2 756 aaPredicted RBP13.78□□□□□ -0.2
CUX1-210ENST00000497815 RIPK3Q9Y572 518 aa13.78□□□□□ -0.2
CUX1-210ENST00000497815 PNMA6FA0A0J9YX94 578 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 ATP2A1O14983 1001 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 PPP1R11O60927 126 aaPredicted RBP13.77□□□□□ -0.21
CUX1-210ENST00000497815 FKTNO75072 461 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 CDKL5O76039 1030 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 HSPA8P11142 646 aaKnown RBP13.77□□□□□ -0.21
CUX1-210ENST00000497815 COL11A1P12107 1806 aaPredicted RBP13.77□□□□□ -0.21
CUX1-210ENST00000497815 IFNAR1P17181 557 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 ERCC3P19447 782 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 LACTBP83111 547 aaPredicted RBP13.77□□□□□ -0.21
CUX1-210ENST00000497815 SSRP1Q08945 709 aaKnown RBP13.77□□□□□ -0.21
CUX1-210ENST00000497815 HEATR3Q7Z4Q2 680 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 CD99L2Q8TCZ2 262 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 GPKOWQ92917 476 aaPredicted RBP eCLIP13.77□□□□□ -0.217e-6■□□□□ 8.1
CUX1-210ENST00000497815 COA7Q96BR5 231 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 AMNQ9BXJ7 453 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 ARHGAP39Q9C0H5 1083 aa13.77□□□□□ -0.21
CUX1-210ENST00000497815 FMNL1O95466 1100 aaPredicted RBP13.76□□□□□ -0.21
CUX1-210ENST00000497815 CTDNEP1O95476 244 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 SLC25A27O95847 323 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 PSMC4P43686 418 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 CTCFP49711 727 aaPredicted RBP13.76□□□□□ -0.21
CUX1-210ENST00000497815 LBX1P52954 281 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 KIF22Q14807 665 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 HSCBQ8IWL3 235 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 TRIM22Q8IYM9 498 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 DDX11Q96FC9 970 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 TRERF1Q96PN7 1200 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 RNF26Q9BY78 433 aaPredicted RBP13.76□□□□□ -0.21
CUX1-210ENST00000497815 RNF146Q9NTX7 359 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 PCDHA1Q9Y5I3 950 aa13.76□□□□□ -0.21
CUX1-210ENST00000497815 PTPDC1A2A3K4 754 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms