RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 WRNIP1Q96S55 665 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 DEFB129Q9H1M3 183 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 KCNQ5Q9NR82 932 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 IL17RBQ9NRM6 502 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 AKAP11Q9UKA4 1901 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 VWA3AA6NCI4 1184 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 DKC1O60832 514 aaKnown RBP eCLIP9.47□□□□□ -0.89
USP54-215ENST00000497106 FLOT1O75955 427 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 ZYXQ15942 572 aaKnown RBP9.47□□□□□ -0.89
USP54-215ENST00000497106 ANGEL2Q5VTE6 544 aaKnown RBP9.47□□□□□ -0.89
USP54-215ENST00000497106 C9orf131Q5VYM1 1079 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 USP50Q70EL3 339 aaPredicted RBP9.47□□□□□ -0.89
USP54-215ENST00000497106 SCYL3Q8IZE3 742 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 ADGRF4Q8IZF3 695 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 RNF214Q8ND24 703 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 NT5C3AQ9H0P0 336 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 GGA3Q9NZ52 723 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 PITPNM2Q9BZ72 1349 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 FZD9O00144 591 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 ZNF202O95125 648 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 MYL1P05976 194 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 TYRO3Q06418 890 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 TKFCQ3LXA3 575 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 STXBP4Q6ZWJ1 553 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 CKAP2LQ8IYA6 745 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 BIN2Q9UBW5 565 aaPredicted RBP9.47□□□□□ -0.89
USP54-215ENST00000497106 CCPG1Q9ULG6 757 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 TMX2Q9Y320 296 aa9.47□□□□□ -0.89
USP54-215ENST00000497106 DOCK2Q92608 1830 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 NDUFB10O96000 172 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 OSBPP22059 807 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 TRIML1Q8N9V2 468 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 GTF3C2Q8WUA4 911 aaPredicted RBP9.46□□□□□ -0.89
USP54-215ENST00000497106 AIFM3Q96NN9 605 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 TRIM5Q9C035 493 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 RIOX1Q9H6W3 641 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 GPRC5DQ9NZD1 345 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 NFKBIEO00221 500 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 INF2Q27J81 1249 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 STAG2Q8N3U4 1231 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 GPT2Q8TD30 523 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 TSG101Q99816 390 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 ZMYND12Q9H0C1 365 aa9.46□□□□□ -0.89
USP54-215ENST00000497106 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.46□□□□□ -0.89
USP54-215ENST00000497106 LRRC37AA6NMS7 1700 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 A0A1B0GVL5 298 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 PFKFB1P16118 471 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 ZNF165P49910 485 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 SEMA3FQ13275 785 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 TSR1Q2NL82 804 aaKnown RBP9.46□□□□□ -0.9
USP54-215ENST00000497106 CCDC174Q6PII3 467 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 PRPF38AQ8NAV1 312 aaKnown RBP9.46□□□□□ -0.9
USP54-215ENST00000497106 TMEM39BQ9GZU3 492 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 STXBP3O00186 592 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 KCNA3P22001 575 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 PTPREP23469 700 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 USH1GQ495M9 461 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 NBPF11Q86T75 865 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 GMLQ99445 158 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 PDGFDQ9GZP0 370 aaPredicted RBP9.46□□□□□ -0.9
USP54-215ENST00000497106 HOXC10Q9NYD6 342 aa9.46□□□□□ -0.9
USP54-215ENST00000497106 PRPHP41219 470 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 CT47A1Q5JQC4 288 aaPredicted RBP9.45□□□□□ -0.9
USP54-215ENST00000497106 NLRX1Q86UT6 975 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 DHX58Q96C10 678 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 EXOC1Q9NV70 894 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 LRWD1Q9UFC0 647 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 FAM196BA6NMK8 535 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 MAP3K9P80192 1104 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 NR5A1Q13285 461 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 QRICH1Q2TAL8 776 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 FAM83BQ5T0W9 1011 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 ZC3H15Q8WU90 426 aaKnown RBP9.45□□□□□ -0.9
USP54-215ENST00000497106 FAM217BQ9NTX9 383 aaPredicted RBP9.45□□□□□ -0.9
USP54-215ENST00000497106 FBXO40Q9UH90 709 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 PNMA3Q9UL41 463 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 SPAG1Q07617 926 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 PTGDRQ13258 359 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 HSP90AA2PQ14568 343 aaPredicted RBP9.45□□□□□ -0.9
USP54-215ENST00000497106 SAMD7Q7Z3H4 446 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 FAM114A1Q8IWE2 563 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 ZNF280CQ8ND82 737 aa9.45□□□□□ -0.9
USP54-215ENST00000497106 MAP3K20Q9NYL2 800 aaKnown RBP9.45□□□□□ -0.9
USP54-215ENST00000497106 DDX25Q9UHL0 483 aaKnown RBP9.45□□□□□ -0.9
USP54-215ENST00000497106 MORC2Q9Y6X9 1032 aaPredicted RBP9.45□□□□□ -0.9
USP54-215ENST00000497106 CFBP00751 764 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 SLC16A2P36021 539 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 SV2BQ7L1I2 683 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP11P51784 963 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 SETQ01105 290 aaPredicted RBP9.44□□□□□ -0.9
USP54-215ENST00000497106 NBPF9Q3BBW0 867 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 RESP18Q5W5W9 173 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 PDILTQ8N807 584 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 TBCKQ8TEA7 893 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 ANO3Q9BYT9 981 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 TMEM63CQ9P1W3 806 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.44□□□□□ -0.9
USP54-215ENST00000497106 IGKV6D-41A0A0C4DH26 115 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP17L15C9J2P7 530 aa9.44□□□□□ -0.9
USP54-215ENST00000497106 USP17L13C9JLJ4 530 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms