RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 C6orf50Q9HD87 102 aa7.89□□□□□ -1.15
USP39-219ENST00000496047 CABP5Q9NP86 173 aa7.89□□□□□ -1.15
USP39-219ENST00000496047 GJB4Q9NTQ9 266 aa7.89□□□□□ -1.15
USP39-219ENST00000496047 USP40Q9NVE5 1235 aa7.89□□□□□ -1.15
USP39-219ENST00000496047 SERPINB13Q9UIV8 391 aa7.89□□□□□ -1.15
USP39-219ENST00000496047 KCNH3Q9ULD8 1083 aa7.89□□□□□ -1.15
USP39-219ENST00000496047 VPS9D1Q9Y2B5 631 aa7.89□□□□□ -1.15
USP39-219ENST00000496047 SRPRBQ9Y5M8 271 aaKnown RBP7.89□□□□□ -1.15
USP39-219ENST00000496047 NEMFO60524 1076 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 NMT2O60551 498 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 TTLL1O95922 423 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 OATP04181 439 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 ATP2B1P20020 1258 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 GUCY1A2P33402 732 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 CRKP46108 304 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 NAPAP54920 295 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 RHBDL3P58872 404 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 NR5A1Q13285 461 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 PKN1Q16512 942 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 GPR162Q16538 588 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 AMHR2Q16671 573 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 AXDND1Q5T1B0 1012 aaPredicted RBP7.88□□□□□ -1.15
USP39-219ENST00000496047 GPATCH4Q5T3I0 446 aaKnown RBP7.88□□□□□ -1.15
USP39-219ENST00000496047 PPP1R18Q6NYC8 613 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 SARM1Q6SZW1 724 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 KRBA2Q6ZNG9 492 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 KRT25Q7Z3Z0 450 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 HEATR3Q7Z4Q2 680 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 LUZP1Q86V48 1076 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 ZSCAN29Q8IWY8 852 aaPredicted RBP7.88□□□□□ -1.15
USP39-219ENST00000496047 RTKN2Q8IZC4 609 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 CMTR1Q8N1G2 835 aaKnown RBP7.88□□□□□ -1.15
USP39-219ENST00000496047 SRBD1Q8N5C6 995 aaKnown RBP7.88□□□□□ -1.15
USP39-219ENST00000496047 DAGLBQ8NCG7 672 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 NKX2-3Q8TAU0 364 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 SMARCE1Q969G3 411 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 CCDC47Q96A33 483 aaKnown RBP7.88□□□□□ -1.15
USP39-219ENST00000496047 ZDHHC15Q96MV8 337 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 TMEM47Q9BQJ4 181 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 GLT8D2Q9H1C3 349 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 EHD4Q9H223 541 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 VPS33BQ9H267 617 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 DBNDD1Q9H9R9 158 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 SERPINA10Q9UK55 444 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 PCDHA4Q9UN74 947 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 HPSEQ9Y251 543 aa7.88□□□□□ -1.15
USP39-219ENST00000496047 GOLGA8CPA6NN73 597 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 KLRF2D3W0D1 207 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 MPHOSPH10O00566 681 aaKnown RBP7.87□□□□□ -1.15
USP39-219ENST00000496047 PPIP5K2O43314 1243 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 PLCD1P51178 756 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 FUT2Q10981 343 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 TRAF1Q13077 416 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 TTLL12Q14166 644 aaPredicted RBP7.87□□□□□ -1.15
USP39-219ENST00000496047 TSR1Q2NL82 804 aaKnown RBP7.87□□□□□ -1.15
USP39-219ENST00000496047 CT47A1Q5JQC4 288 aaPredicted RBP7.87□□□□□ -1.15
USP39-219ENST00000496047 ARL6IP4Q66PJ3 421 aaKnown RBP7.87□□□□□ -1.15
USP39-219ENST00000496047 RCSD1Q6JBY9 416 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 PIK3AP1Q6ZUJ8 805 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 AOPEPQ8N6M6 819 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 RASSF8Q8NHQ8 419 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 NAP1L4Q99733 375 aaKnown RBP7.87□□□□□ -1.15
USP39-219ENST00000496047 CDHR5Q9HBB8 845 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 GPBP1L1Q9HC44 474 aaPredicted RBP7.87□□□□□ -1.15
USP39-219ENST00000496047 BARHL2Q9NY43 387 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 MAD2L2Q9UI95 211 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 FBXO2Q9UK22 296 aaPredicted RBP7.87□□□□□ -1.15
USP39-219ENST00000496047 MTMR7Q9Y216 660 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 DOCK1Q14185 1865 aa7.87□□□□□ -1.15
USP39-219ENST00000496047 ESYT2A0FGR8 921 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 PALM3A6NDB9 673 aaPredicted RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 IKBKBO14920 756 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 ZNF500O60304 480 aaPredicted RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 WDHD1O75717 1129 aaPredicted RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 LONP1P36776 959 aaKnown RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 SCNN1DP51172 638 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 ZNF75DP51815 510 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 GSDMDP57764 484 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 ATP2C1P98194 919 aaPredicted RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 POSTNQ15063 836 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 NONOQ15233 471 aaKnown RBP eCLIP7.86□□□□□ -1.15
USP39-219ENST00000496047 GRIK5Q16478 980 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 CCDC96Q2M329 555 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 DNTTIP2Q5QJE6 756 aaKnown RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 MCTP2Q6DN12 878 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 SHC4Q6S5L8 630 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 C11orf57Q6ZUT1 292 aaPredicted RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 TTLL6Q8N841 843 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 SLC44A5Q8NCS7 719 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 CEP95Q96GE4 821 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 MRFAP1L1Q96HT8 127 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 GTPBP4Q9BZE4 634 aaKnown RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 RAB34Q9BZG1 259 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 KDM4CQ9H3R0 1056 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 MAGEF1Q9HAY2 307 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 RRAGDQ9NQL2 400 aaPredicted RBP7.86□□□□□ -1.15
USP39-219ENST00000496047 IL17RBQ9NRM6 502 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 RMND1Q9NWS8 449 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 PI4KBQ9UBF8 816 aa7.86□□□□□ -1.15
USP39-219ENST00000496047 CLIP2Q9UDT6 1046 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms