RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 TTMPQ5BVD1 217 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 ARL6IP4Q66PJ3 421 aaKnown RBP10.81□□□□□ -0.68
SYNE1-230ENST00000495090 MREGQ8N565 214 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 ZBTB38Q8NAP3 1195 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-230ENST00000495090 SPATA4Q8NEY3 305 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 SHISA4Q96DD7 197 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 GDAP1L1Q96MZ0 367 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 ZBTB3Q9H5J0 574 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 RBM28Q9NW13 759 aaKnown RBP10.81□□□□□ -0.68
SYNE1-230ENST00000495090 VPS54Q9P1Q0 977 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 STIM2Q9P246 746 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 MAGEC2Q9UBF1 373 aaPredicted RBP10.81□□□□□ -0.68
SYNE1-230ENST00000495090 CEP83Q9Y592 693 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 CAPN7Q9Y6W3 813 aa10.81□□□□□ -0.68
SYNE1-230ENST00000495090 BCORQ6W2J9 1755 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 TNS3Q68CZ2 1445 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 FAM205CA6NFA0 338 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 LONP1P36776 959 aaKnown RBP10.8□□□□□ -0.68
SYNE1-230ENST00000495090 FUT2Q10981 343 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 MAP3K12Q12852 859 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 PTGDRQ13258 359 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 SEC23AQ15436 765 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 EARS2Q5JPH6 523 aaKnown RBP10.8□□□□□ -0.68
SYNE1-230ENST00000495090 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.8□□□□□ -0.68
SYNE1-230ENST00000495090 C3orf20Q8ND61 904 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 LRRC1Q9BTT6 524 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 EPN3Q9H201 632 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 EHD4Q9H223 541 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 BLZF1Q9H2G9 400 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 SH2D4AQ9H788 454 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 INCENPQ9NQS7 918 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 EXOC1Q9NV70 894 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 RNF14Q9UBS8 474 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 HYOU1Q9Y4L1 999 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 LRP5O75197 1615 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 TNS2Q63HR2 1409 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 MYH2Q9UKX2 1941 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 CHUKO15111 745 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 MBD4O95243 580 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 LCA5LO95447 670 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 SMTNP53814 917 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 NAP1L1P55209 391 aaKnown RBP10.8□□□□□ -0.68
SYNE1-230ENST00000495090 SPA17Q15506 151 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 HAUS3Q68CZ6 603 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 TTLL11Q8NHH1 800 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 RRP36Q96EU6 259 aaKnown RBP10.8□□□□□ -0.68
SYNE1-230ENST00000495090 UBAC1Q9BSL1 405 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 DMGDHQ9UI17 866 aaKnown RBP10.8□□□□□ -0.68
SYNE1-230ENST00000495090 FER1L4A9Z1Z3 1794 aa10.8□□□□□ -0.68
SYNE1-230ENST00000495090 ADAMTSL3P82987 1691 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 TMCO5BA8MYB1 307 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 PSMA7O14818 248 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 PDE8BO95263 885 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 TRIM21P19474 475 aaKnown RBP10.79□□□□□ -0.68
SYNE1-230ENST00000495090 PPP1R2P41236 205 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 NPY5RQ15761 445 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 LDHAL6AQ6ZMR3 332 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 FAM114A1Q8IWE2 563 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 TSEN2Q8NCE0 465 aaKnown RBP10.79□□□□□ -0.68
SYNE1-230ENST00000495090 ARL8AQ96BM9 186 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 DHTKD1Q96HY7 919 aaPredicted RBP10.79□□□□□ -0.68
SYNE1-230ENST00000495090 ALS2CR12Q96Q35 445 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 ERGIC2Q96RQ1 377 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 VCPKMTQ9H867 229 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 TSKSQ9UJT2 592 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 ANAPC4Q9UJX5 808 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 PLCH1Q4KWH8 1693 aa10.79□□□□□ -0.68
SYNE1-230ENST00000495090 ERVV-2B6SEH9 535 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 H0YHG0 523 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 WNT7AO00755 349 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 RHOBTB3O94955 611 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 A1BGP04217 495 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 CALM1P0DP23 149 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 CALM2P0DP24 149 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 CALM3P0DP25 149 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 LSP1P33241 339 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 PDCLQ13371 301 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 ZNF174Q15697 407 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 SKIDA1Q1XH10 827 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 NAA35Q5VZE5 725 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 TTI2Q6NXR4 508 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 ZSCAN29Q8IWY8 852 aaPredicted RBP10.78□□□□□ -0.68
SYNE1-230ENST00000495090 IQCKQ8N0W5 287 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 CCDC82Q8N4S0 544 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 HDAC7Q8WUI4 952 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 NUP133Q8WUM0 1156 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.78□□□□□ -0.68
SYNE1-230ENST00000495090 ZIM3Q96PE6 472 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 OSBPL9Q96SU4 736 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 GDF3Q9NR23 364 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 GDAQ9Y2T3 454 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 SAMM50Q9Y512 469 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 RREB1Q92766 1687 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 MACROD2A1Z1Q3 448 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 ANKRD18BA2A2Z9 1011 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 RASSF10A6NK89 507 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 CLGNO14967 610 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 COBLO75128 1261 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 PPP1R37O75864 691 aa10.78□□□□□ -0.68
SYNE1-230ENST00000495090 PAFAH1B1P43034 410 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms