RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 GREM1O60565 184 aa7.79□□□□□ -1.16
SCN1A-206ENST00000491429 BMP8BP34820 402 aa7.79□□□□□ -1.16
SCN1A-206ENST00000491429 LIMS1P48059 325 aa7.79□□□□□ -1.16
SCN1A-206ENST00000491429 PLEKHN1Q494U1 663 aaPredicted RBP7.79□□□□□ -1.16
SCN1A-206ENST00000491429 CRTC3Q6UUV7 619 aa7.79□□□□□ -1.16
SCN1A-206ENST00000491429 FRMD5Q7Z6J6 570 aa7.79□□□□□ -1.16
SCN1A-206ENST00000491429 MKRN2Q9H000 416 aaKnown RBP7.79□□□□□ -1.16
SCN1A-206ENST00000491429 ANTXR1Q9H6X2 564 aa7.79□□□□□ -1.16
SCN1A-206ENST00000491429 EHMT1Q9H9B1 1298 aa7.79□□□□□ -1.16
SCN1A-206ENST00000491429 SUPT16HQ9Y5B9 1047 aaKnown RBP7.79□□□□□ -1.16
SCN1A-206ENST00000491429 ROBO2Q9HCK4 1378 aa7.79□□□□□ -1.16
SCN1A-206ENST00000491429 VAV1P15498 845 aa7.78□□□□□ -1.16
SCN1A-206ENST00000491429 EIF4A3P38919 411 aaKnown RBP7.78□□□□□ -1.16
SCN1A-206ENST00000491429 CLCQ05315 142 aa7.78□□□□□ -1.16
SCN1A-206ENST00000491429 FBXL21Q9UKT6 434 aa7.78□□□□□ -1.16
SCN1A-206ENST00000491429 PRICKLE3O43900 615 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-206ENST00000491429 MSL3P1P0C860 447 aa7.77□□□□□ -1.17
SCN1A-206ENST00000491429 IGFBP6P24592 240 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-206ENST00000491429 ZNF200P98182 395 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-206ENST00000491429 SLC6A18Q96N87 628 aa7.77□□□□□ -1.17
SCN1A-206ENST00000491429 BDH2Q9BUT1 245 aa7.77□□□□□ -1.17
SCN1A-206ENST00000491429 PCDHB12Q9Y5F1 795 aa7.77□□□□□ -1.17
SCN1A-206ENST00000491429 IRS2Q9Y4H2 1338 aa7.77□□□□□ -1.17
SCN1A-206ENST00000491429 ENDOUP21128 410 aaKnown RBP7.76□□□□□ -1.17
SCN1A-206ENST00000491429 CCNFP41002 786 aa7.76□□□□□ -1.17
SCN1A-206ENST00000491429 PLP2Q04941 152 aa7.76□□□□□ -1.17
SCN1A-206ENST00000491429 EFEMP1Q12805 493 aa7.76□□□□□ -1.17
SCN1A-206ENST00000491429 RTP2Q5QGT7 225 aa7.76□□□□□ -1.17
SCN1A-206ENST00000491429 GK5Q6ZS86 529 aa7.76□□□□□ -1.17
SCN1A-206ENST00000491429 ZNF296Q8WUU4 475 aaPredicted RBP7.76□□□□□ -1.17
SCN1A-206ENST00000491429 PLA2G2DQ9UNK4 145 aa7.76□□□□□ -1.17
SCN1A-206ENST00000491429 NME1P15531 152 aaKnown RBP7.75□□□□□ -1.17
SCN1A-206ENST00000491429 MAPKAPK2P49137 400 aa7.75□□□□□ -1.17
SCN1A-206ENST00000491429 SLURP1P55000 103 aa7.75□□□□□ -1.17
SCN1A-206ENST00000491429 MVKQ03426 396 aa7.75□□□□□ -1.17
SCN1A-206ENST00000491429 AUHQ13825 339 aaKnown RBP7.75□□□□□ -1.17
SCN1A-206ENST00000491429 RTP5Q14D33 572 aa7.75□□□□□ -1.17
SCN1A-206ENST00000491429 SEZ6Q53EL9 994 aa7.75□□□□□ -1.17
SCN1A-206ENST00000491429 ZC3H14Q6PJT7 736 aaKnown RBP7.75□□□□□ -1.17
SCN1A-206ENST00000491429 UBP1Q9NZI7 540 aa7.75□□□□□ -1.17
SCN1A-206ENST00000491429 HCFC2Q9Y5Z7 792 aa7.75□□□□□ -1.17
SCN1A-206ENST00000491429 KCNC1P48547 511 aa7.74□□□□□ -1.17
SCN1A-206ENST00000491429 SPATS1Q496A3 300 aa7.74□□□□□ -1.17
SCN1A-206ENST00000491429 ADGRG2Q8IZP9 1017 aa7.74□□□□□ -1.17
SCN1A-206ENST00000491429 NR1I3Q14994 352 aa7.73□□□□□ -1.17
SCN1A-206ENST00000491429 AEBP1Q8IUX7 1158 aa7.73□□□□□ -1.17
SCN1A-206ENST00000491429 EAF1Q96JC9 268 aaPredicted RBP7.73□□□□□ -1.17
SCN1A-206ENST00000491429 ADAMTS1Q9UHI8 967 aa7.73□□□□□ -1.17
SCN1A-206ENST00000491429 A0A1B0GTL3 188 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 FAM86C2PA6NEL3 165 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 TNFRSF10CO14798 259 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 PLA2G1BP04054 148 aaKnown RBP7.72□□□□□ -1.17
SCN1A-206ENST00000491429 GSTM1P09488 218 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 PFKLP17858 780 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 FBLN1P23142 703 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 CAP1Q01518 475 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 VWA3BQ502W6 1294 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 LSRQ86X29 649 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-206ENST00000491429 BORCS6Q96GS4 357 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 SLC9A7Q96T83 725 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 SLC12A9Q9BXP2 914 aa7.72□□□□□ -1.17
SCN1A-206ENST00000491429 A0A1W2PQ27 194 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 A0A1W2PQ64 194 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 A0A1W2PQC6 194 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 A0A1W2PQD8 194 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 MEIS3P2A8K0S8 358 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 SHOXO15266 292 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 GSNP06396 782 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 DBHP09172 617 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 MCM4P33991 863 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 REXO1Q8N1G1 1221 aaKnown RBP7.71□□□□□ -1.18
SCN1A-206ENST00000491429 NAT16Q8N8M0 369 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 DSCC1Q9BVC3 393 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 TMPRSS5Q9H3S3 457 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 PRR13Q9NZ81 148 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 SUSD2Q9UGT4 822 aa7.71□□□□□ -1.18
SCN1A-206ENST00000491429 C9IYK1 514 aa7.7□□□□□ -1.18
SCN1A-206ENST00000491429 ATF2P15336 505 aa7.7□□□□□ -1.18
SCN1A-206ENST00000491429 ZXDCQ2QGD7 858 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-206ENST00000491429 NLGN1Q8N2Q7 840 aa7.7□□□□□ -1.18
SCN1A-206ENST00000491429 FNIP1Q8TF40 1166 aa7.7□□□□□ -1.18
SCN1A-206ENST00000491429 H0Y8X5 98 aa7.69□□□□□ -1.18
SCN1A-206ENST00000491429 FOXO4P98177 505 aa7.69□□□□□ -1.18
SCN1A-206ENST00000491429 APOBRQ0VD83 1088 aa7.69□□□□□ -1.18
SCN1A-206ENST00000491429 TARBP2Q15633 366 aaKnown RBP7.69□□□□□ -1.18
SCN1A-206ENST00000491429 PAQR3Q6TCH7 311 aa7.69□□□□□ -1.18
SCN1A-206ENST00000491429 LIPIQ6XZB0 460 aa7.69□□□□□ -1.18
SCN1A-206ENST00000491429 JAMLQ86YT9 394 aa7.69□□□□□ -1.18
SCN1A-206ENST00000491429 C7orf61Q8IZ16 206 aa7.69□□□□□ -1.18
SCN1A-206ENST00000491429 SPATA25Q9BR10 227 aa7.69□□□□□ -1.18
SCN1A-206ENST00000491429 SUCOQ9UBS9 1254 aaKnown RBP7.69□□□□□ -1.18
SCN1A-206ENST00000491429 SRGAP3O43295 1099 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 CYBBP04839 570 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 ACRP10323 421 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 INSRRP14616 1297 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 ZNF165P49910 485 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 LRRFIP1Q32MZ4 808 aaKnown RBP7.68□□□□□ -1.18
SCN1A-206ENST00000491429 ZFYVE27Q5T4F4 411 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 NT5DC1Q5TFE4 455 aa7.68□□□□□ -1.18
SCN1A-206ENST00000491429 HLA-DQA1Q5Y7H0 255 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms