RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 OTOP1Q7RTM1 612 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 NCAPG2Q86XI2 1143 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 RAB11FIP4Q86YS3 637 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 RIOX2Q8IUF8 465 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 CCDC144CPQ8IYA2 1237 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 ADGRF4Q8IZF3 695 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 TRIM47Q96LD4 638 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 PORCNQ9H237 461 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 CPVLQ9H3G5 476 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 VAT1LQ9HCJ6 419 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 RBM28Q9NW13 759 aaKnown RBP12.65□□□□□ -0.38
VPS13D-210ENST00000489961 IVNS1ABPQ9Y6Y0 642 aa12.65□□□□□ -0.38
VPS13D-210ENST00000489961 PLXNB2O15031 1838 aa12.65□□□□□ -0.39
VPS13D-210ENST00000489961 ICAM1P05362 532 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 ERCC3P19447 782 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 SMARCA1P28370 1054 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 CTGFP29279 349 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 METAP2P50579 478 aaKnown RBP eCLIP12.64□□□□□ -0.39
VPS13D-210ENST00000489961 NEK4P51957 841 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 PKN2Q16513 984 aaKnown RBP12.64□□□□□ -0.39
VPS13D-210ENST00000489961 RTN1Q16799 776 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 TKFCQ3LXA3 575 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 GPR142Q7Z601 462 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 PLEKHH3Q7Z736 793 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 ALDH8A1Q9H2A2 487 aaPredicted RBP12.64□□□□□ -0.39
VPS13D-210ENST00000489961 CCPG1Q9ULG6 757 aa12.64□□□□□ -0.39
VPS13D-210ENST00000489961 ZNF536O15090 1300 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 CCDC196A0A1B0GTZ2 297 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 STRNO43815 780 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 EVCP57679 992 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 CAP1Q01518 475 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 TRAF1Q13077 416 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 CDC37Q16543 378 aaPredicted RBP12.63□□□□□ -0.39
VPS13D-210ENST00000489961 CHST13Q8NET6 341 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 SOCS4Q8WXH5 440 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 AGBL1Q96MI9 1066 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 TBC1D32Q96NH3 1257 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 NUDT12Q9BQG2 462 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 SPZ1Q9BXG8 430 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 RIOX1Q9H6W3 641 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 JMJD4Q9H9V9 463 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 SRRDQ9UH36 339 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 FBXO40Q9UH90 709 aa12.63□□□□□ -0.39
VPS13D-210ENST00000489961 DOCK3Q8IZD9 2030 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 NID2Q14112 1375 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 SLC15A5A6NIM6 579 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 PLEKHA8P1O95397 391 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 FCER1AP12319 257 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 ALAS1P13196 640 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 PTPREP23469 700 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 AK2P54819 239 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 RABEP1Q15276 862 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 QRICH1Q2TAL8 776 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 TMTC3Q6ZXV5 915 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 FBXO11Q86XK2 927 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 HOMER1Q86YM7 354 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 ABRAQ8N0Z2 381 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 SRBD1Q8N5C6 995 aaKnown RBP12.62□□□□□ -0.39
VPS13D-210ENST00000489961 IL27Q8NEV9 243 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 MTMR8Q96EF0 704 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 RRP36Q96EU6 259 aaKnown RBP12.62□□□□□ -0.39
VPS13D-210ENST00000489961 ZNF274Q96GC6 653 aaPredicted RBP12.62□□□□□ -0.39
VPS13D-210ENST00000489961 HOMER2Q9NSB8 354 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 RNF146Q9NTX7 359 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 RIPK3Q9Y572 518 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 ZNF236Q9UL36 1845 aa12.62□□□□□ -0.39
VPS13D-210ENST00000489961 ZNFX1Q9P2E3 1918 aaKnown RBP12.61□□□□□ -0.39
VPS13D-210ENST00000489961 ZBTB5O15062 677 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 CYTH3O43739 400 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 PDIA3P30101 505 aaKnown RBP12.61□□□□□ -0.39
VPS13D-210ENST00000489961 FLT3LGP49771 235 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 PRKCZQ05513 592 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 KCTD2Q14681 263 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 FBXO46Q6PJ61 603 aaPredicted RBP12.61□□□□□ -0.39
VPS13D-210ENST00000489961 NBPF11Q86T75 865 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 RAET1EQ8TD07 263 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 TRERF1Q96PN7 1200 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 PIGSQ96S52 555 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 MMP19Q99542 508 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 KIF2CQ99661 725 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 LARP6Q9BRS8 491 aaKnown RBP12.61□□□□□ -0.39
VPS13D-210ENST00000489961 AMNQ9BXJ7 453 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 ACAD9Q9H845 621 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 SLC5A4Q9NY91 659 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 SEC63Q9UGP8 760 aaKnown RBP12.61□□□□□ -0.39
VPS13D-210ENST00000489961 GABRQQ9UN88 632 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 HPS5Q9UPZ3 1129 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 PTPN22Q9Y2R2 807 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 ABCB11O95342 1321 aa12.61□□□□□ -0.39
VPS13D-210ENST00000489961 BAZ2BQ9UIF8 2168 aaKnown RBP12.6□□□□□ -0.39
VPS13D-210ENST00000489961 PNMA6FA0A0J9YX94 578 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 CDC27P30260 824 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 RGS2P41220 211 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 CCT2P78371 535 aaKnown RBP12.6□□□□□ -0.39
VPS13D-210ENST00000489961 MAP2K5Q13163 448 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 IRF5Q13568 498 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 GRB14Q14449 540 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 SLC35G1Q2M3R5 365 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 USH1GQ495M9 461 aa12.6□□□□□ -0.39
VPS13D-210ENST00000489961 MORN1Q5T089 497 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms